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NCBP1 nuclear cap binding protein subunit 1 [ Sorex araneus (European shrew) ]

Gene ID: 101558728, updated on 8-Mar-2024

Summary

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Gene symbol
NCBP1
Gene description
nuclear cap binding protein subunit 1
See related
EnsemblRapid:ENSSARG00000007274
Gene type
protein coding
RefSeq status
MODEL
Organism
Sorex araneus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Eulipotyphla; Soricidae; Soricinae; Sorex
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
23
Annotation release Status Assembly Chr Location
RS_2023_04 current mSorAra2.pri (GCF_027595985.1) 1 NC_073302.1 (35945768..35981837)
101 previous assembly SorAra2.0 (GCF_000181275.1) Unplaced Scaffold NW_004545856.1 (45852499..45888533, complement)

Chromosome 1 - NC_073302.1Genomic Context describing neighboring genes Neighboring gene tudor domain containing 7 Neighboring gene small nucleolar RNA SNORA61 Neighboring gene tropomodulin 1 Neighboring gene thiosulfate sulfurtransferase like domain containing 2 Neighboring gene XPA, DNA damage recognition and repair factor Neighboring gene forkhead box E1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA cap binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA export from nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of mRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of nuclear cap binding complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nuclear cap-binding protein subunit 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027595985.1-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mSorAra2.pri

Genomic

  1. NC_073302.1 Reference mSorAra2.pri

    Range
    35945768..35981837
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004600255.2 → XP_004600312.1  nuclear cap-binding protein subunit 1 isoform X1

    Related
    ENSSARP00000006596.2, ENSSART00000007277.2
    Conserved Domains (3) summary
    smart00543
    Location:28 → 240
    MIF4G; Middle domain of eukaryotic initiation factor 4G (eIF4G)
    pfam09088
    Location:351 → 470
    MIF4G_like; MIF4G like
    pfam09090
    Location:491 → 754
    MIF4G_like_2; MIF4G like

  2. XM_055139653.1 → XP_054995628.1  nuclear cap-binding protein subunit 1 isoform X2

Nucleotide Protein
Heading Accession and Version

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