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cir1 corepressor interacting with RBPJ, CIR1 [ Maylandia zebra (zebra mbuna) ]

Gene ID: 101486040, updated on 8-Mar-2024

Summary

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Gene symbol
cir1
Gene description
corepressor interacting with RBPJ, CIR1
See related
Ensembl:ENSMZEG00005004982
Gene type
protein coding
RefSeq status
MODEL
Organism
Maylandia zebra
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Maylandia; Maylandia zebra complex
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG16
Exon count:
10
Annotation release Status Assembly LG Location
104 current M_zebra_UMD2a (GCF_000238955.4) LG16 NC_036795.1 (17632064..17638189)
101 previous assembly MetZeb1.1 (GCF_000238955.1) Unplaced Scaffold NW_004531763.1 (1516747..1522477, complement)

Linkage Group LG16 - NC_036795.1Genomic Context describing neighboring genes Neighboring gene integral membrane protein GPR155-like Neighboring gene secernin 3 Neighboring gene sp9 transcription factor Neighboring gene Obg like ATPase 1 Neighboring gene sp3a transcription factor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transcription corepressor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
corepressor interacting with RBPJ 1
Names
CBF1 (RBPJ) interacting corepressor 1
corepressor interacting with RBPJ, 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Maylandia zebra Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference M_zebra_UMD2a Primary Assembly

Genomic

  1. NC_036795.1 Reference M_zebra_UMD2a Primary Assembly

    Range
    17632064..17638189
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004557747.1 → XP_004557804.1  corepressor interacting with RBPJ 1

    UniProtKB/TrEMBL
    A0A3P9B979
    Related
    ENSMZEP00005006440.1, ENSMZET00005006735.1
    Conserved Domains (1) summary
    smart01083
    Location:13 → 49
    Cir_N; N-terminal domain of CBF1 interacting co-repressor CIR
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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