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trpc1 transient receptor potential cation channel, subfamily C, member 1 [ Maylandia zebra (zebra mbuna) ]

Gene ID: 101484852, updated on 8-Mar-2024

Summary

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Gene symbol
trpc1
Gene description
transient receptor potential cation channel, subfamily C, member 1
See related
Ensembl:ENSMZEG00005021979
Gene type
protein coding
RefSeq status
MODEL
Organism
Maylandia zebra
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Maylandia; Maylandia zebra complex
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG9
Exon count:
13
Annotation release Status Assembly LG Location
104 current M_zebra_UMD2a (GCF_000238955.4) LG9 NC_036788.1 (7909085..7923297)
101 previous assembly MetZeb1.1 (GCF_000238955.1) Unplaced Scaffold NW_004531724.1 (6960846..6975088)

Linkage Group LG9 - NC_036788.1Genomic Context describing neighboring genes Neighboring gene sodium/hydrogen exchanger 9 Neighboring gene carbohydrate sulfotransferase 2 Neighboring gene procollagen C-endopeptidase enhancer 2b Neighboring gene U2 snRNP-associated SURP domain containing

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables inositol 1,4,5 trisphosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables store-operated calcium channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in calcium ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in manganese ion transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cytosolic calcium ion concentration IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cation channel complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
short transient receptor potential channel 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Maylandia zebra Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference M_zebra_UMD2a Primary Assembly

Genomic

  1. NC_036788.1 Reference M_zebra_UMD2a Primary Assembly

    Range
    7909085..7923297
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004546787.4 → XP_004546844.1  short transient receptor potential channel 1

    See identical proteins and their annotated locations for XP_004546844.1

    UniProtKB/TrEMBL
    A0A3P9D4A4, A0A3P9D4H1
    Related
    ENSMZEP00005029468.1, ENSMZET00005030396.1
    Conserved Domains (2) summary
    TIGR00870
    Location:46 → 776
    trp; transient-receptor-potential calcium channel protein
    sd00045
    Location:81 → 110
    ANK; ANK repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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