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etv6 ETS variant transcription factor 6 [ Maylandia zebra (zebra mbuna) ]

Gene ID: 101482441, updated on 8-Mar-2024

Summary

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Gene symbol
etv6
Gene description
ETS variant transcription factor 6
See related
Ensembl:ENSMZEG00005018226
Gene type
protein coding
RefSeq status
MODEL
Organism
Maylandia zebra
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Maylandia; Maylandia zebra complex
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: LG17
Exon count:
8
Annotation release Status Assembly LG Location
104 current M_zebra_UMD2a (GCF_000238955.4) LG17 NC_036796.1 (32721633..32752399, complement)
101 previous assembly MetZeb1.1 (GCF_000238955.1) Unplaced Scaffold NW_004531746.1 (2401512..2432677)

Linkage Group LG17 - NC_036796.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 16 member 7 Neighboring gene TAFA chemokine like family member 2 Neighboring gene uncharacterized LOC105940416 Neighboring gene poly [ADP-ribose] polymerase 12 Neighboring gene poly [ADP-ribose] polymerase 12

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor ETV6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Maylandia zebra Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference M_zebra_UMD2a Primary Assembly

Genomic

  1. NC_036796.1 Reference M_zebra_UMD2a Primary Assembly

    Range
    32721633..32752399 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014407310.2 → XP_014262796.1  transcription factor ETV6 isoform X2

    UniProtKB/TrEMBL
    A0A3P9CPW0, A0A3P9CQS7
    Related
    ENSMZEP00005024393.1, ENSMZET00005025193.1
    Conserved Domains (3) summary
    cd08535
    Location:54 → 121
    SAM_PNT-Tel_Yan; Sterile alpha motif (SAM)/Pointed domain of Tel/Yan protein
    smart00413
    Location:362 → 448
    ETS; erythroblast transformation specific domain
    cl29994
    Location:164 → 274
    Herpes_ICP4_C; Herpesvirus ICP4-like protein C-terminal region

  2. XM_004553870.4 → XP_004553927.1  transcription factor ETV6 isoform X1

    UniProtKB/TrEMBL
    A0A3P9CQS7
    Related
    ENSMZEP00005024397.1, ENSMZET00005025197.1
    Conserved Domains (3) summary
    cd08535
    Location:55 → 122
    SAM_PNT-Tel_Yan; Sterile alpha motif (SAM)/Pointed domain of Tel/Yan protein
    smart00413
    Location:363 → 449
    ETS; erythroblast transformation specific domain
    cl29994
    Location:165 → 275
    Herpes_ICP4_C; Herpesvirus ICP4-like protein C-terminal region
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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