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oma1 OMA1 zinc metallopeptidase [ Maylandia zebra (zebra mbuna) ]

Gene ID: 101464148, updated on 8-Mar-2024

Summary

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Gene symbol
oma1
Gene description
OMA1 zinc metallopeptidase
See related
Ensembl:ENSMZEG00005019698
Gene type
protein coding
RefSeq status
MODEL
Organism
Maylandia zebra
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Maylandia; Maylandia zebra complex
Orthologs
human zebrafish all
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Genomic context

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See oma1 in Genome Data Viewer
Location:
chromosome: LG23
Exon count:
8
Annotation release Status Assembly LG Location
104 current M_zebra_UMD2a (GCF_000238955.4) LG23 NC_036801.1 (6595183..6605599)
101 previous assembly MetZeb1.1 (GCF_000238955.1) Unplaced Scaffold NW_004531760.1 (3309868..3320281, complement)

Linkage Group LG23 - NC_036801.1Genomic Context describing neighboring genes Neighboring gene SUN domain containing ossification factor Neighboring gene Myb-like, SWIRM and MPN domains 1 Neighboring gene DAB adaptor protein 1a Neighboring gene FYN-binding protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metalloendopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mitochondrial protein processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein quality control for misfolded or incompletely synthesized proteins IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrial inner membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
metalloendopeptidase OMA1, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Maylandia zebra Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference M_zebra_UMD2a Primary Assembly

Genomic

  1. NC_036801.1 Reference M_zebra_UMD2a Primary Assembly

    Range
    6595183..6605599
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004557204.1 → XP_004557261.1  metalloendopeptidase OMA1, mitochondrial isoform X1

    UniProtKB/TrEMBL
    A0A3P9CVI3
    Related
    ENSMZEP00005026395.1, ENSMZET00005027248.1
    Conserved Domains (2) summary
    COG0501
    Location:179 → 401
    HtpX; Zn-dependent protease with chaperone function [Posttranslational modification, protein turnover, chaperones]
    pfam01435
    Location:209 → 399
    Peptidase_M48; Peptidase family M48

  2. XM_004557205.1 → XP_004557262.1  metalloendopeptidase OMA1, mitochondrial isoform X2

    Conserved Domains (2) summary
    COG0501
    Location:30 → 252
    HtpX; Zn-dependent protease with chaperone function [Posttranslational modification, protein turnover, chaperones]
    pfam01435
    Location:60 → 250
    Peptidase_M48; Peptidase family M48
Nucleotide Protein
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