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SEC24B SEC24 homolog B, COPII coat complex component [ Odobenus rosmarus divergens (Pacific walrus) ]

Gene ID: 101374917, updated on 8-Mar-2024

Summary

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Gene symbol
SEC24B
Gene description
SEC24 homolog B, COPII coat complex component
Gene type
protein coding
RefSeq status
MODEL
Organism
Odobenus rosmarus divergens (sub-species: divergens)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Odobenidae; Odobenus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
26
Annotation release Status Assembly Chr Location
101 current Oros_1.0 (GCF_000321225.1) Unplaced Scaffold NW_004450803.1 (1639414..1727282)

NW_004450803.1Genomic Context describing neighboring genes Neighboring gene ethanolamine-phosphate phospho-lyase Neighboring gene collagen type XXV alpha 1 chain Neighboring gene mitochondrial calcium uniporter dominant negative subunit beta Neighboring gene caspase 6

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004450803.1 Unplaced Scaffold Reference Oros_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables SNARE binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in COPII-coated vesicle cargo loading IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of COPII vesicle coat IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum exit site IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein transport protein Sec24B
Names
SEC24 family, member B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Odobenus rosmarus divergens Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Oros_1.0 Primary Assembly

Genomic

  1. NW_004450803.1 Reference Oros_1.0 Primary Assembly

    Range
    1639414..1727282
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004411246.2 → XP_004411303.1  protein transport protein Sec24B isoform X2

    UniProtKB/TrEMBL
    A0A2U3WQ32
    Conserved Domains (6) summary
    COG5028
    Location:454 → 1257
    COG5028; Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]
    cd01479
    Location:666 → 909
    Sec24-like; Sec24-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles. The two main classes ...
    pfam00626
    Location:1130 → 1205
    Gelsolin; Gelsolin repeat
    pfam04810
    Location:593 → 629
    zf-Sec23_Sec24; Sec23/Sec24 zinc finger
    pfam04815
    Location:1009 → 1104
    Sec23_helical; Sec23/Sec24 helical domain
    pfam08033
    Location:910 → 994
    Sec23_BS; Sec23/Sec24 beta-sandwich domain

  2. XM_004411247.2 → XP_004411304.1  protein transport protein Sec24B isoform X4

    UniProtKB/TrEMBL
    A0A2U3WQ33
    Conserved Domains (7) summary
    COG5028
    Location:419 → 1222
    COG5028; Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]
    cd01479
    Location:631 → 874
    Sec24-like; Sec24-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles. The two main classes ...
    pfam00626
    Location:1095 → 1170
    Gelsolin; Gelsolin repeat
    pfam04810
    Location:558 → 594
    zf-Sec23_Sec24; Sec23/Sec24 zinc finger
    pfam04815
    Location:974 → 1069
    Sec23_helical; Sec23/Sec24 helical domain
    pfam07223
    Location:9 → 273
    DUF1421; Protein of unknown function (DUF1421)
    pfam08033
    Location:875 → 959
    Sec23_BS; Sec23/Sec24 beta-sandwich domain

  3. XM_012566194.1 → XP_012421648.1  protein transport protein Sec24B isoform X3

    Conserved Domains (6) summary
    COG5028
    Location:454 → 1256
    COG5028; Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]
    cd01479
    Location:665 → 908
    Sec24-like; Sec24-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles. The two main classes ...
    pfam00626
    Location:1129 → 1204
    Gelsolin; Gelsolin repeat
    pfam04810
    Location:592 → 628
    zf-Sec23_Sec24; Sec23/Sec24 zinc finger
    pfam04815
    Location:1008 → 1103
    Sec23_helical; Sec23/Sec24 helical domain
    pfam08033
    Location:909 → 993
    Sec23_BS; Sec23/Sec24 beta-sandwich domain

  4. XM_012566193.1 → XP_012421647.1  protein transport protein Sec24B isoform X1

    Conserved Domains (7) summary
    COG5028
    Location:485 → 1287
    COG5028; Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]
    cd01479
    Location:696 → 939
    Sec24-like; Sec24-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles. The two main classes ...
    pfam00626
    Location:1160 → 1235
    Gelsolin; Gelsolin repeat
    pfam04810
    Location:623 → 659
    zf-Sec23_Sec24; Sec23/Sec24 zinc finger
    pfam04815
    Location:1039 → 1134
    Sec23_helical; Sec23/Sec24 helical domain
    pfam07223
    Location:59 → 304
    DUF1421; Protein of unknown function (DUF1421)
    pfam08033
    Location:940 → 1024
    Sec23_BS; Sec23/Sec24 beta-sandwich domain

  5. XM_012566195.1 → XP_012421649.1  protein transport protein Sec24B isoform X5

    Conserved Domains (6) summary
    COG5028
    Location:371 → 1173
    COG5028; Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]
    cd01479
    Location:582 → 825
    Sec24-like; Sec24-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles. The two main classes ...
    pfam00626
    Location:1046 → 1121
    Gelsolin; Gelsolin repeat
    pfam04810
    Location:509 → 545
    zf-Sec23_Sec24; Sec23/Sec24 zinc finger
    pfam04815
    Location:925 → 1020
    Sec23_helical; Sec23/Sec24 helical domain
    pfam08033
    Location:826 → 910
    Sec23_BS; Sec23/Sec24 beta-sandwich domain

  6. XM_012566196.1 → XP_012421650.1  protein transport protein Sec24B isoform X6

    Conserved Domains (7) summary
    COG5028
    Location:344 → 1147
    COG5028; Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]
    cd01479
    Location:556 → 799
    Sec24-like; Sec24-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles. The two main classes ...
    pfam00626
    Location:1020 → 1095
    Gelsolin; Gelsolin repeat
    pfam04810
    Location:483 → 519
    zf-Sec23_Sec24; Sec23/Sec24 zinc finger
    pfam04815
    Location:899 → 994
    Sec23_helical; Sec23/Sec24 helical domain
    pfam07223
    Location:1 → 254
    DUF1421; Protein of unknown function (DUF1421)
    pfam08033
    Location:800 → 884
    Sec23_BS; Sec23/Sec24 beta-sandwich domain
Nucleotide Protein
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