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CHAD chondroadherin [ Odobenus rosmarus divergens (Pacific walrus) ]

Gene ID: 101370869, updated on 8-Mar-2024

Summary

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Gene symbol
CHAD
Gene description
chondroadherin
Gene type
protein coding
RefSeq status
MODEL
Organism
Odobenus rosmarus divergens (sub-species: divergens)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Odobenidae; Odobenus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
101 current Oros_1.0 (GCF_000321225.1) Unplaced Scaffold NW_004450302.1 (4685756..4689766, complement)

NW_004450302.1Genomic Context describing neighboring genes Neighboring gene transfer RNA threonine (anticodon CGU) Neighboring gene essential meiotic structure-specific endonuclease 1 Neighboring gene leucine rich repeat containing 59 Neighboring gene acyl-CoA synthetase family member 2 Neighboring gene radical S-adenosyl methionine domain containing 1 Neighboring gene MYCBP associated protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004450302.1 Unplaced Scaffold Reference Oros_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chondroadherin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Odobenus rosmarus divergens Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Oros_1.0 Primary Assembly

Genomic

  1. NW_004450302.1 Reference Oros_1.0 Primary Assembly

    Range
    4685756..4689766 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004395159.1 → XP_004395216.1  chondroadherin

    See identical proteins and their annotated locations for XP_004395216.1

    UniProtKB/TrEMBL
    A0A2U3ZBF8
    Conserved Domains (5) summary
    smart00082
    Location:300 → 347
    LRRCT; Leucine rich repeat C-terminal domain
    cd00116
    Location:44 → 282
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:53 → 76
    LRR_RI; leucine-rich repeat [structural motif]
    pfam01462
    Location:23 → 49
    LRRNT; Leucine rich repeat N-terminal domain
    pfam13855
    Location:75 → 135
    LRR_8; Leucine rich repeat

  2. XM_012560527.1 → XP_012415981.1  chondroadherin

    See identical proteins and their annotated locations for XP_012415981.1

    UniProtKB/TrEMBL
    A0A2U3ZBF8
    Conserved Domains (5) summary
    smart00082
    Location:300 → 347
    LRRCT; Leucine rich repeat C-terminal domain
    cd00116
    Location:44 → 282
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:53 → 76
    LRR_RI; leucine-rich repeat [structural motif]
    pfam01462
    Location:23 → 49
    LRRNT; Leucine rich repeat N-terminal domain
    pfam13855
    Location:75 → 135
    LRR_8; Leucine rich repeat
Nucleotide Protein
Heading Accession and Version

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