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NKX3-1 NK3 homeobox 1 [ Odobenus rosmarus divergens (Pacific walrus) ]

Gene ID: 101364398, updated on 8-Mar-2024

Summary

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Gene symbol
NKX3-1
Gene description
NK3 homeobox 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Odobenus rosmarus divergens (sub-species: divergens)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Odobenidae; Odobenus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
101 current Oros_1.0 (GCF_000321225.1) Unplaced Scaffold NW_004450417.1 (2006601..2008370, complement)

NW_004450417.1Genomic Context describing neighboring genes Neighboring gene ectonucleoside triphosphate diphosphohydrolase 4 Neighboring gene solute carrier family 25 member 37 Neighboring gene NK2 homeobox 6 Neighboring gene leucine rich repeat containing 27

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004450417.1 Unplaced Scaffold Reference Oros_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
homeobox protein Nkx-3.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Odobenus rosmarus divergens Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Oros_1.0 Primary Assembly

Genomic

  1. NW_004450417.1 Reference Oros_1.0 Primary Assembly

    Range
    2006601..2008370 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004402216.1 → XP_004402273.1  homeobox protein Nkx-3.1 isoform X2

    UniProtKB/TrEMBL
    A0A2U3W2Q9
    Conserved Domains (1) summary
    pfam00046
    Location:52 → 105
    Homeobox; Homeobox domain

  2. XM_004402215.1 → XP_004402272.1  homeobox protein Nkx-3.1 isoform X1

    UniProtKB/TrEMBL
    A0A2U3W2S3
    Conserved Domains (1) summary
    pfam00046
    Location:124 → 177
    Homeobox; Homeobox domain
Nucleotide Protein
Heading Accession and Version

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