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TLR1 toll like receptor 1 [ Odobenus rosmarus divergens (Pacific walrus) ]

Gene ID: 101362806, updated on 8-Mar-2024

Summary

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Gene symbol
TLR1
Gene description
toll like receptor 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Odobenus rosmarus divergens (sub-species: divergens)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Odobenidae; Odobenus
Orthologs
human mouse all
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Genomic context

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See TLR1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
1
Annotation release Status Assembly Chr Location
101 current Oros_1.0 (GCF_000321225.1) Unplaced Scaffold NW_004450314.1 (5851366..5853892)

NW_004450314.1Genomic Context describing neighboring genes Neighboring gene 40S ribosomal protein S15a pseudogene Neighboring gene toll like receptor 6 Neighboring gene toll like receptor 10 Neighboring gene KLF transcription factor 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004450314.1 Unplaced Scaffold Reference Oros_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables Toll-like receptor 2 binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables lipopeptide binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transmembrane signaling receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellular response to triacyl bacterial lipopeptide IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in inflammatory response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in toll-like receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Toll-like receptor 1-Toll-like receptor 2 protein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
toll-like receptor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Odobenus rosmarus divergens Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Oros_1.0 Primary Assembly

Genomic

  1. NW_004450314.1 Reference Oros_1.0 Primary Assembly

    Range
    5851366..5853892
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004396165.2 → XP_004396222.1  toll-like receptor 1

    UniProtKB/TrEMBL
    A0A2U3VMS6
    Conserved Domains (6) summary
    smart00082
    Location:528 → 581
    LRRCT; Leucine rich repeat C-terminal domain
    smart00255
    Location:640 → 783
    TIR; Toll - interleukin 1 - resistance
    cd00116
    Location:357 → 461
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00031
    Location:51 → 74
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:356 → 377
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:73 → 128
    LRR_8; Leucine rich repeat
Nucleotide Protein
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