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PRPF39 pre-mRNA processing factor 39 [ Tursiops truncatus (common bottlenose dolphin) ]

Gene ID: 101336797, updated on 8-Mar-2024

Summary

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Gene symbol
PRPF39
Gene description
pre-mRNA processing factor 39
See related
EnsemblRapid:ENSTTRG00000006653
Gene type
protein coding
RefSeq status
MODEL
Organism
Tursiops truncatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Delphinidae; Tursiops
Orthologs
human mouse all
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Genomic context

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See PRPF39 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
16
Annotation release Status Assembly Chr Location
102 current mTurTru1.mat.Y (GCF_011762595.1) 2 NC_047035.1 (54727485..54764837, complement)
101 previous assembly NIST Tur_tru v1 (GCF_001922835.1) Unplaced Scaffold NW_017842414.1 (49010985..49048358, complement)

Chromosome 2 - NC_047035.1Genomic Context describing neighboring genes Neighboring gene FA complementation group M Neighboring gene small nucleolar RNA SNORD127 Neighboring gene FKBP prolyl isomerase 3 Neighboring gene TOG array regulator of axonemal microtubules 1 Neighboring gene kelch like family member 28

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mRNA 5'-splice site recognition IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U1 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U2-type prespliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of commitment complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pre-mRNA-processing factor 39

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Tursiops truncatus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mTurTru1.mat.Y Primary Assembly

Genomic

  1. NC_047035.1 Reference mTurTru1.mat.Y Primary Assembly

    Range
    54727485..54764837 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019923963.2 → XP_019779522.1  pre-mRNA-processing factor 39 isoform X1

    UniProtKB/TrEMBL
    A0A2U4AEW8
    Related
    ENSTTRP00000016920.1, ENSTTRT00000027251.1
    Conserved Domains (2) summary
    sd00006
    Location:453 → 481
    TPR; TPR repeat [structural motif]
    cl26993
    Location:52 → 453
    Suf; Suppressor of forked protein (Suf)

  2. XM_019923964.1 → XP_019779523.1  pre-mRNA-processing factor 39 isoform X2

    UniProtKB/TrEMBL
    A0A2U4AFD7
    Conserved Domains (2) summary
    COG5107
    Location:40 → 334
    RNA14; Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
    sd00006
    Location:334 → 362
    TPR; TPR repeat [structural motif]

  3. XM_033851176.1 → XP_033707067.1  pre-mRNA-processing factor 39 isoform X2

    UniProtKB/TrEMBL
    A0A2U4AFD7
    Conserved Domains (2) summary
    COG5107
    Location:40 → 334
    RNA14; Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
    sd00006
    Location:334 → 362
    TPR; TPR repeat [structural motif]

  4. XM_019923966.2 → XP_019779525.1  pre-mRNA-processing factor 39 isoform X2

    UniProtKB/TrEMBL
    A0A2U4AFD7
    Related
    ENSTTRP00000034418.1, ENSTTRT00000043753.1
    Conserved Domains (2) summary
    COG5107
    Location:40 → 334
    RNA14; Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
    sd00006
    Location:334 → 362
    TPR; TPR repeat [structural motif]

  5. XM_019923965.2 → XP_019779524.1  pre-mRNA-processing factor 39 isoform X2

    UniProtKB/TrEMBL
    A0A2U4AFD7
    Conserved Domains (2) summary
    COG5107
    Location:40 → 334
    RNA14; Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
    sd00006
    Location:334 → 362
    TPR; TPR repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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