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PDZD8 PDZ domain containing 8 [ Tursiops truncatus (common bottlenose dolphin) ]

Gene ID: 101333044, updated on 11-Apr-2024

Summary

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Gene symbol
PDZD8
Gene description
PDZ domain containing 8
See related
EnsemblRapid:ENSTTRG00000005284
Gene type
protein coding
RefSeq status
MODEL
Organism
Tursiops truncatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Delphinidae; Tursiops
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 16
Exon count:
5
Annotation release Status Assembly Chr Location
102 current mTurTru1.mat.Y (GCF_011762595.1) 16 NC_047049.1 (13234316..13330887)
101 previous assembly NIST Tur_tru v1 (GCF_001922835.1) Unplaced Scaffold NW_017843484.1 (19264829..19353710, complement)

Chromosome 16 - NC_047049.1Genomic Context describing neighboring genes Neighboring gene non-histone chromosomal protein HMG-14-like Neighboring gene uncharacterized LOC109550673 Neighboring gene gamma-aminobutyric acid receptor subunit alpha-5 Neighboring gene solute carrier family 18 member A2 Neighboring gene potassium two pore domain channel subfamily K member 18

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables lipid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mitochondrial calcium ion homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitochondrion-endoplasmic reticulum membrane tethering IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondria-associated endoplasmic reticulum membrane contact site IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
PDZ domain-containing protein 8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Tursiops truncatus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mTurTru1.mat.Y Primary Assembly

Genomic

  1. NC_047049.1 Reference mTurTru1.mat.Y Primary Assembly

    Range
    13234316..13330887
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019940066.2 → XP_019795625.1  PDZ domain-containing protein 8 isoform X1

    UniProtKB/TrEMBL
    A0A2U4BQY7
    Related
    ENSTTRP00000004981.2, ENSTTRT00000005283.2
    Conserved Domains (4) summary
    PRK03427
    Location:491 → 635
    PRK03427; cell division protein ZipA; Provisional
    cd00029
    Location:840 → 882
    C1; Protein kinase C conserved region 1 (C1) . Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second ...
    cd00992
    Location:363 → 440
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    pfam15485
    Location:575 → 704
    DUF4643; Domain of unknown function (DUF4643)

  2. XM_019940068.2 → XP_019795627.1  PDZ domain-containing protein 8 isoform X2

    UniProtKB/TrEMBL
    A0A2U4BQY5
    Related
    ENSTTRP00000016979.1, ENSTTRT00000042585.1
    Conserved Domains (4) summary
    cd00029
    Location:798 → 840
    C1; Protein kinase C conserved region 1 (C1) . Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second ...
    cd00992
    Location:321 → 398
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    pfam15485
    Location:533 → 662
    DUF4643; Domain of unknown function (DUF4643)
    cl27169
    Location:449 → 593
    ZipA; ZipA C-terminal domain. ZipA, a membrane-anchored protein, is one of at least nine essential gene products necessary for assembly of the septal ring which mediates cell division in E.coli. ZipA and FtsA directly bind FtsZ, a homolog of eukaryotic ...
Nucleotide Protein
Heading Accession and Version

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