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PCLO piccolo presynaptic cytomatrix protein [ Tursiops truncatus (common bottlenose dolphin) ]

Gene ID: 101316103, updated on 8-Mar-2024

Summary

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Gene symbol
PCLO
Gene description
piccolo presynaptic cytomatrix protein
Gene type
protein coding
RefSeq status
MODEL
Organism
Tursiops truncatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Delphinidae; Tursiops
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 9
Exon count:
16
Annotation release Status Assembly Chr Location
102 current mTurTru1.mat.Y (GCF_011762595.1) 9 NC_047042.1 (25738262..25934132, complement)
101 previous assembly NIST Tur_tru v1 (GCF_001922835.1) Unplaced Scaffold NW_017842131.1 (74213373..74540891)

Chromosome 9 - NC_047042.1Genomic Context describing neighboring genes Neighboring gene calcium voltage-gated channel auxiliary subunit alpha2delta 1 Neighboring gene transfer RNA aspartic acid (anticodon GUC) Neighboring gene josephin-1-like Neighboring gene RWD domain-containing protein 4-like Neighboring gene semaphorin 3E Neighboring gene keratin, type II cytoskeletal 8-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of presynaptic active zone IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in presynaptic active zone assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein localization to synapse IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in GABA-ergic synapse IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in axon IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoskeleton of presynaptic active zone IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in glutamatergic synapse IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: protein piccolo

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Tursiops truncatus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mTurTru1.mat.Y Primary Assembly

Genomic

  1. NC_047042.1 Reference mTurTru1.mat.Y Primary Assembly

    Range
    25738262..25934132 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_033862780.1 → XP_033718671.1  LOW QUALITY PROTEIN: protein piccolo

    UniProtKB/TrEMBL
    A0A6J3RVT0
    Conserved Domains (6) summary
    PTZ00121
    Location:113 → 645
    PTZ00121; MAEBL; Provisional
    cd04031
    Location:3774 → 3897
    C2A_RIM1alpha; C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins
    COG3064
    Location:2282 → 2358
    TolA; Membrane protein involved in colicin uptake [Cell wall/membrane/envelope biogenesis]
    PRK10263
    Location:2540 → 3047
    PRK10263; DNA translocase FtsK; Provisional
    cd00992
    Location:3576 → 3667
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    cl28890
    Location:60 → 80
    FYVE_like_SF; FYVE domain like superfamily
Nucleotide Protein
Heading Accession and Version

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