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PRRX1 paired related homeobox 1 [ Orcinus orca (killer whale) ]

Gene ID: 101289891, updated on 8-Mar-2024

Summary

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Gene symbol
PRRX1
Gene description
paired related homeobox 1
See related
EnsemblRapid:ENSOORG00010019186
Gene type
protein coding
RefSeq status
MODEL
Organism
Orcinus orca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Delphinidae; Orcinus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_02 current mOrcOrc1.1 (GCF_937001465.1) 1 NC_064559.1 (59694717..59769312, complement)

Chromosome 1 - NC_064559.1Genomic Context describing neighboring genes Neighboring gene flavin containing dimethylaniline monoxygenase 3 Neighboring gene maestro heat like repeat family member 9 Neighboring gene golgin, RAB6 interacting Neighboring gene N-terminal Xaa-Pro-Lys N-methyltransferase 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_064559.1 Chromosome 1 Reference mOrcOrc1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
paired mesoderm homeobox protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_937001465.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mOrcOrc1.1 Primary Assembly

Genomic

  1. NC_064559.1 Reference mOrcOrc1.1 Primary Assembly

    Range
    59694717..59769312 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004269748.3 → XP_004269796.1  paired mesoderm homeobox protein 1 isoform X1

    See identical proteins and their annotated locations for XP_004269796.1

    Related
    ENSOORP00010025294.1, ENSOORT00010028729.1
    Conserved Domains (2) summary
    pfam00046
    Location:99 → 151
    Homeobox; Homeobox domain
    pfam03826
    Location:219 → 235
    OAR; OAR domain

  2. XM_004269749.4 → XP_004269797.1  paired mesoderm homeobox protein 1 isoform X2

    See identical proteins and their annotated locations for XP_004269797.1

    Related
    ENSOORP00010025289.1, ENSOORT00010028724.1
    Conserved Domains (1) summary
    pfam00046
    Location:99 → 151
    Homeobox; Homeobox domain
Nucleotide Protein
Heading Accession and Version

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