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gtf2h4 general transcription factor IIH, polypeptide 4 [ Oryzias latipes (Japanese medaka) ]

Gene ID: 101173874, updated on 8-Mar-2024

Summary

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Gene symbol
gtf2h4
Gene description
general transcription factor IIH, polypeptide 4
See related
EnsemblRapid:ENSORLG00000010704
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias latipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 11
Exon count:
15
Annotation release Status Assembly Chr Location
103 current ASM223467v1 (GCF_002234675.1) 11 NC_019869.2 (21553670..21566828)
102 previous assembly ASM31367v1 (GCF_000313675.1) 11 NC_019869.1 (21126343..21139966)

Chromosome 11 - NC_019869.2Genomic Context describing neighboring genes Neighboring gene alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase b Neighboring gene RNA polymerase I subunit H Neighboring gene transmembrane protein 200B Neighboring gene erythrocyte membrane protein band 4.1a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATPase activator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables double-stranded DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nucleotide-excision repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of transcription factor TFIIH core complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription factor TFIIH holo complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
general transcription factor IIH subunit 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM223467v1 Primary Assembly

Genomic

  1. NC_019869.2 Reference ASM223467v1 Primary Assembly

    Range
    21553670..21566828
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011481174.3 → XP_011479476.1  general transcription factor IIH subunit 4

    See identical proteins and their annotated locations for XP_011479476.1

    UniProtKB/TrEMBL
    A0A3P9HQ73, A0A3P9LAJ2, H2M4Q1
    Related
    ENSORLP00000013420.2, ENSORLT00000013421.3
    Conserved Domains (1) summary
    cl04289
    Location:11 → 456
    Tfb2; Transcription factor Tfb2
Nucleotide Protein
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