Format

Send to:

Choose Destination

gtf2h4 general transcription factor IIH, polypeptide 4 [ Danio rerio (zebrafish) ]

Gene ID: 334839, updated on 25-Aug-2020

Summary

Official Symbol
gtf2h4provided by ZNC
Official Full Name
general transcription factor IIH, polypeptide 4provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-6779
See related
Ensembl:ENSDARG00000036071
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
p5; wu:fa04h0; zgc:77721; wu:fa04h09
Orthologs

Genomic context

See gtf2h4 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
14
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 19 NC_007130.7 (27316467..27334330, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 19 NC_007130.6 (27732244..27750107, complement)
103 previous assembly Zv9 (GCF_000002035.4) 19 NC_007130.5 (27802132..27819995, complement)

Chromosome 19 - NC_007130.7Genomic Context describing neighboring genes Neighboring gene gamma-aminobutyric acid (GABA) B receptor, 1b Neighboring gene SH3-binding domain protein 5-like, b Neighboring gene RNA polymerase I subunit H Neighboring gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B Neighboring gene alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase b

Genomic regions, transcripts, and products

Pathways from PubChem

General gene information

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
ATPase activator activity IEA
Inferred from Electronic Annotation
more info
 
double-stranded DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
DNA repair IEA
Inferred from Electronic Annotation
more info
 
cellular response to DNA damage stimulus IEA
Inferred from Electronic Annotation
more info
 
intracellular signal transduction IEA
Inferred from Electronic Annotation
more info
 
nucleotide-excision repair IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleotide-excision repair IEA
Inferred from Electronic Annotation
more info
 
phosphorylation of RNA polymerase II C-terminal domain IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
nucleus IEA
Inferred from Electronic Annotation
more info
 
transcription factor TFIIH core complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
transcription factor TFIIH core complex IEA
Inferred from Electronic Annotation
more info
 
transcription factor TFIIH holo complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
general transcription factor IIH subunit 4
Names
p52

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_199927.1NP_956221.1  general transcription factor IIH subunit 4

    See identical proteins and their annotated locations for NP_956221.1

    Status: PROVISIONAL

    Source sequence(s)
    BC064301
    UniProtKB/TrEMBL
    Q6P2T8
    Related
    ENSDARP00000052358.6, ENSDART00000052359.7
    Conserved Domains (1) summary
    cl04289
    Location:11463
    Tfb2; Transcription factor Tfb2

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007130.7 Reference GRCz11 Primary Assembly

    Range
    27316467..27334330 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Support Center