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tpm1 tropomyosin 1 (alpha) [ Oryzias latipes (Japanese medaka) ]

Gene ID: 101168205, updated on 12-Sep-2024

Summary

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Gene symbol
tpm1
Gene description
tropomyosin 1 (alpha)
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias latipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
human zebrafish all
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Genomic context

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See tpm1 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
14
Annotation release Status Assembly Chr Location
103 current ASM223467v1 (GCF_002234675.1) 6 NC_019864.2 (17540372..17550599)
102 previous assembly ASM31367v1 (GCF_000313675.1) 6 NC_019864.1 (12327374..12335959)

Chromosome 6 - NC_019864.2Genomic Context describing neighboring genes Neighboring gene C2 calcium dependent domain containing 4A Neighboring gene talin 2b Neighboring gene uncharacterized LOC110016399 Neighboring gene lactamase, beta Neighboring gene transmembrane protein 266

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin filament organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cardiac muscle contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in actin filament IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tropomyosin alpha-1 chain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM223467v1 Primary Assembly

Genomic

  1. NC_019864.2 Reference ASM223467v1 Primary Assembly

    Range
    17540372..17550599
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023955807.1 → XP_023811575.1  tropomyosin alpha-1 chain isoform X7

    Conserved Domains (1) summary
    pfam00261
    Location:48 → 282
    Tropomyosin

  2. XM_023955804.1 → XP_023811572.1  tropomyosin alpha-1 chain isoform X4

    UniProtKB/TrEMBL
    A0A3B3I241, A0A3P9JNS3, A0A3P9JSK0
    Conserved Domains (1) summary
    pfam00261
    Location:48 → 282
    Tropomyosin

  3. XM_023955805.1 → XP_023811573.1  tropomyosin alpha-1 chain isoform X5

    UniProtKB/TrEMBL
    A0A3P9JSK0
    Conserved Domains (1) summary
    pfam00261
    Location:48 → 282
    Tropomyosin

  4. XM_023955811.1 → XP_023811579.1  tropomyosin alpha-1 chain isoform X11

    Conserved Domains (1) summary
    pfam00261
    Location:48 → 282
    Tropomyosin

  5. XM_023955810.1 → XP_023811578.1  tropomyosin alpha-1 chain isoform X10

    Conserved Domains (1) summary
    pfam00261
    Location:48 → 282
    Tropomyosin

  6. XM_023955809.1 → XP_023811577.1  tropomyosin alpha-1 chain isoform X9

    Conserved Domains (1) summary
    pfam00261
    Location:48 → 282
    Tropomyosin

  7. XM_023955808.1 → XP_023811576.1  tropomyosin alpha-1 chain isoform X8

    UniProtKB/TrEMBL
    A0A3B3H855, A0A3P9IFI9
    Conserved Domains (1) summary
    pfam00261
    Location:48 → 282
    Tropomyosin

  8. XM_023955806.1 → XP_023811574.1  tropomyosin alpha-1 chain isoform X6

    Conserved Domains (1) summary
    pfam00261
    Location:48 → 282
    Tropomyosin

  9. XM_023955802.1 → XP_023811570.1  tropomyosin alpha-1 chain isoform X2

    UniProtKB/TrEMBL
    A0A3P9IFE5
    Conserved Domains (1) summary
    pfam00261
    Location:12 → 246
    Tropomyosin

  10. XM_023955801.1 → XP_023811569.1  tropomyosin alpha-1 chain isoform X1

    UniProtKB/TrEMBL
    A0A3B3IK26, A0A3P9JTT2
    Conserved Domains (1) summary
    pfam00261
    Location:12 → 246
    Tropomyosin

  11. XM_023955803.1 → XP_023811571.1  tropomyosin alpha-1 chain isoform X3

    Conserved Domains (1) summary
    pfam00261
    Location:12 → 246
    Tropomyosin
Nucleotide Protein
Heading Accession and Version

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