U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

sh3d21 SH3 domain containing 21 [ Oryzias latipes (Japanese medaka) ]

Gene ID: 101167234, updated on 8-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
sh3d21
Gene description
SH3 domain containing 21
See related
EnsemblRapid:ENSORLG00000014532
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias latipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
human zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 16
Exon count:
18
Annotation release Status Assembly Chr Location
103 current ASM223467v1 (GCF_002234675.1) 16 NC_019874.2 (23475626..23486422, complement)
102 previous assembly ASM31367v1 (GCF_000313675.1) 16 NC_019874.1 (20560687..20572107, complement)

Chromosome 16 - NC_019874.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111948988 Neighboring gene eva-1 homolog Ba (C. elegans) Neighboring gene thyroid hormone receptor associated protein 3a Neighboring gene MAP7 domain containing 1a

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
SH3 domain-containing protein 21

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM223467v1 Primary Assembly

Genomic

  1. NC_019874.2 Reference ASM223467v1 Primary Assembly

    Range
    23475626..23486422 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011485649.3 → XP_011483951.1  SH3 domain-containing protein 21 isoform X2

    UniProtKB/TrEMBL
    H2MHU6
    Related
    ENSORLP00000018214.3, ENSORLT00000018215.3
    Conserved Domains (2) summary
    cd12142
    Location:178 → 232
    SH3_D21-like; Src Homology 3 domain of SH3 domain-containing protein 21 (SH3D21) and similar proteins
    cl17036
    Location:82 → 134
    SH3; Src Homology 3 domain superfamily

  2. XM_004078437.4 → XP_004078485.1  SH3 domain-containing protein 21 isoform X3

    UniProtKB/TrEMBL
    H2MHU6
    Related
    ENSORLP00000072271.1, ENSORLT00000068956.1
    Conserved Domains (2) summary
    cd12142
    Location:178 → 232
    SH3_D21-like; Src Homology 3 domain of SH3 domain-containing protein 21 (SH3D21) and similar proteins
    cl17036
    Location:82 → 134
    SH3; Src Homology 3 domain superfamily

  3. XM_011485647.3 → XP_011483949.1  SH3 domain-containing protein 21 isoform X1

    See identical proteins and their annotated locations for XP_011483949.1

    UniProtKB/TrEMBL
    H2MHU6
    Conserved Domains (2) summary
    cd12142
    Location:178 → 232
    SH3_D21-like; Src Homology 3 domain of SH3 domain-containing protein 21 (SH3D21) and similar proteins
    cl17036
    Location:82 → 134
    SH3; Src Homology 3 domain superfamily

  4. XM_011485648.3 → XP_011483950.1  SH3 domain-containing protein 21 isoform X1

    See identical proteins and their annotated locations for XP_011483950.1

    UniProtKB/TrEMBL
    H2MHU6
    Conserved Domains (2) summary
    cd12142
    Location:178 → 232
    SH3_D21-like; Src Homology 3 domain of SH3 domain-containing protein 21 (SH3D21) and similar proteins
    cl17036
    Location:82 → 134
    SH3; Src Homology 3 domain superfamily
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.