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katnb1 katanin p80 (WD repeat containing) subunit B 1 [ Oryzias latipes (Japanese medaka) ]

Gene ID: 101167102, updated on 8-Mar-2024

Summary

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Gene symbol
katnb1
Gene description
katanin p80 (WD repeat containing) subunit B 1
See related
EnsemblRapid:ENSORLG00000018451
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias latipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 3
Exon count:
19
Annotation release Status Assembly Chr Location
103 current ASM223467v1 (GCF_002234675.1) 3 NC_019861.2 (37564427..37574472, complement)
102 previous assembly ASM31367v1 (GCF_000313675.1) Unplaced Scaffold NW_004095156.1 (341810..346761, complement)

Chromosome 3 - NC_019861.2Genomic Context describing neighboring genes Neighboring gene cyclic nucleotide-gated cation channel beta-3 Neighboring gene uncharacterized LOC110014661 Neighboring gene kinesin family member C3 Neighboring gene RAB8B, member RAS oncogene family Neighboring gene pleckstrin homology domain containing, family G (with RhoGef domain) member 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables microtubule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in microtubule depolymerization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in microtubule severing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of katanin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
katanin p80 WD40 repeat-containing subunit B1
Names
katanin regulatory subunit B1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM223467v1 Primary Assembly

Genomic

  1. NC_019861.2 Reference ASM223467v1 Primary Assembly

    Range
    37564427..37574472 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023953778.1 → XP_023809546.1  katanin p80 WD40 repeat-containing subunit B1

    UniProtKB/TrEMBL
    A0A3P9L0N7, H2MW72
    Related
    ENSORLP00000023091.2, ENSORLT00000023092.3
    Conserved Domains (4) summary
    cd00200
    Location:13 → 257
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:23 → 61
    7WD40; WD40 repeat [structural motif]
    pfam13925
    Location:526 → 677
    Katanin_con80; con80 domain of Katanin
    cl26464
    Location:309 → 510
    Atrophin-1; Atrophin-1 family
Nucleotide Protein
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