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trmt1l tRNA methyltransferase 1-like [ Oryzias latipes (Japanese medaka) ]

Gene ID: 101165126, updated on 8-Mar-2024

Summary

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Gene symbol
trmt1l
Gene description
tRNA methyltransferase 1-like
See related
EnsemblRapid:ENSORLG00000029610
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias latipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 4
Exon count:
17
Annotation release Status Assembly Chr Location
103 current ASM223467v1 (GCF_002234675.1) 4 NC_019862.2 (23537444..23564632, complement)
102 previous assembly ASM31367v1 (GCF_000313675.1) Unplaced Scaffold NW_004091197.1 (44..11470, complement)

Chromosome 4 - NC_019862.2Genomic Context describing neighboring genes Neighboring gene N-terminal Xaa-Pro-Lys N-methyltransferase Neighboring gene niban apoptosis regulator 1a Neighboring gene interferon-induced protein with tetratricopeptide repeats 1-like Neighboring gene uncharacterized LOC110014941

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tRNA N2-guanine methylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
TRMT1-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM223467v1 Primary Assembly

Genomic

  1. NC_019862.2 Reference ASM223467v1 Primary Assembly

    Range
    23537444..23564632 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023954416.1 → XP_023810184.1  TRMT1-like protein isoform X1

    UniProtKB/TrEMBL
    A0A3B3IDC7, A0A3P9K016
    Related
    ENSORLP00000041756.2, ENSORLT00000044007.2
    Conserved Domains (1) summary
    cl17173
    Location:205 → 641
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...

  2. XM_023954417.1 → XP_023810185.1  TRMT1-like protein isoform X2

    UniProtKB/TrEMBL
    A0A3B3IIX2, A0A3P9K016
    Related
    ENSORLP00000043779.2, ENSORLT00000045377.2
    Conserved Domains (1) summary
    cl17173
    Location:145 → 581
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
Nucleotide Protein
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