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abcg5 ATP-binding cassette, sub-family G (WHITE), member 5 [ Oryzias latipes (Japanese medaka) ]

Gene ID: 101158719, updated on 8-Mar-2024

Summary

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Gene symbol
abcg5
Gene description
ATP-binding cassette, sub-family G (WHITE), member 5
See related
EnsemblRapid:ENSORLG00000004654
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias latipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 15
Exon count:
14
Annotation release Status Assembly Chr Location
103 current ASM223467v1 (GCF_002234675.1) 15 NC_019873.2 (16465477..16476731)
102 previous assembly ASM31367v1 (GCF_000313675.1) 15 NC_019873.1 (15646437..15657691)

Chromosome 15 - NC_019873.2Genomic Context describing neighboring genes Neighboring gene leucine-rich pentatricopeptide repeat containing Neighboring gene ATP-binding cassette, sub-family G (WHITE), member 8 Neighboring gene dynein, cytoplasmic 2, light intermediate chain 1 Neighboring gene LYR motif containing 7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Rice Stomatal Closure Requires Guard Cell Plasma Membrane ATP-Binding Cassette Transporter RCN1/OsABCG5. Matsuda S, et al. Mol Plant, 2016 Mar 7. PMID 26708605
  2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. role of ABCG5 protein in stomatal closure
    Title: Rice Stomatal Closure Requires Guard Cell Plasma Membrane ATP-Binding Cassette Transporter RCN1/OsABCG5.
Submit: New GeneRIF Correction

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ABC-type transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cholesterol homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ATP-binding cassette sub-family G member 5
Names
ATP binding cassette subfamily G member 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM223467v1 Primary Assembly

Genomic

  1. NC_019873.2 Reference ASM223467v1 Primary Assembly

    Range
    16465477..16476731
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004077296.3 → XP_004077344.1  ATP-binding cassette sub-family G member 5

    UniProtKB/TrEMBL
    A0A3P9IAZ4, H2LIM6
    Related
    ENSORLP00000005856.3, ENSORLT00000005857.3
    Conserved Domains (3) summary
    cd03234
    Location:39 → 265
    ABCG_White; White pigment protein homolog of ABCG transporter subfamily
    TIGR00955
    Location:14 → 637
    3a01204; The Eye Pigment Precursor Transporter (EPP) Family protein
    pfam01061
    Location:361 → 568
    ABC2_membrane; ABC-2 type transporter
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials