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ZNF18 zinc finger protein 18 [ Ovis aries (sheep) ]

Gene ID: 101114536, updated on 8-Mar-2024

Summary

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Gene symbol
ZNF18
Gene description
zinc finger protein 18
See related
EnsemblRapid:ENSOARG00020017351
Gene type
protein coding
RefSeq status
MODEL
Organism
Ovis aries
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Caprinae; Ovis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 11
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_10 current ARS-UI_Ramb_v3.0 (GCF_016772045.2) 11 NC_056064.1 (30414715..30436755, complement)

Chromosome 11 - NC_056064.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC132657340 Neighboring gene dynein axonemal heavy chain 9 Neighboring gene mitogen-activated protein kinase kinase 4 Neighboring gene kelch repeat and BTB domain-containing protein 4 Neighboring gene uncharacterized LOC121820587

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_056064.1 Chromosome 11 Reference ARS-UI_Ramb_v3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein 18

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_016772045.2-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UI_Ramb_v3.0 Primary Assembly

Genomic

  1. NC_056064.1 Reference ARS-UI_Ramb_v3.0 Primary Assembly

    Range
    30414715..30436755 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027974874.3 → XP_027830675.1  zinc finger protein 18 isoform X2

  2. XM_015098659.3 → XP_014954145.1  zinc finger protein 18 isoform X1

    UniProtKB/TrEMBL
    A0A6P3TWV3
    Conserved Domains (5) summary
    cd07765
    Location:221 → 249
    KRAB_A-box; KRAB (Kruppel-associated box) domain -A box
    COG5048
    Location:309 → 539
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:462 → 482
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:475 → 499
    zf-H2C2_2; Zinc-finger double domain
    cl02605
    Location:37 → 148
    SCAN; SCAN oligomerization domain

  3. XM_012185750.4 → XP_012041140.1  zinc finger protein 18 isoform X2

    Conserved Domains (7) summary
    smart00431
    Location:37 → 148
    SCAN; leucine rich region
    cd07765
    Location:220 → 248
    KRAB_A-box; KRAB (Kruppel-associated box) domain -A box
    COG5048
    Location:308 → 538
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:461 → 481
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:431 → 453
    zf-C2H2; Zinc finger, C2H2 type
    pfam02023
    Location:37 → 125
    SCAN; SCAN domain
    pfam13465
    Location:474 → 498
    zf-H2C2_2; Zinc-finger double domain

  4. XM_012185748.4 → XP_012041138.1  zinc finger protein 18 isoform X1

    See identical proteins and their annotated locations for XP_012041138.1

    UniProtKB/TrEMBL
    A0A6P3TWV3
    Conserved Domains (5) summary
    cd07765
    Location:221 → 249
    KRAB_A-box; KRAB (Kruppel-associated box) domain -A box
    COG5048
    Location:309 → 539
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:462 → 482
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:475 → 499
    zf-H2C2_2; Zinc-finger double domain
    cl02605
    Location:37 → 148
    SCAN; SCAN oligomerization domain

  5. XM_042255677.1 → XP_042111611.1  zinc finger protein 18 isoform X1

    UniProtKB/TrEMBL
    A0A6P3TWV3
    Related
    ENSOARP00020039134.1, ENSOART00020026689.2
    Conserved Domains (5) summary
    cd07765
    Location:221 → 249
    KRAB_A-box; KRAB (Kruppel-associated box) domain -A box
    COG5048
    Location:309 → 539
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:462 → 482
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:475 → 499
    zf-H2C2_2; Zinc-finger double domain
    cl02605
    Location:37 → 148
    SCAN; SCAN oligomerization domain

  6. XM_027974873.3 → XP_027830674.1  zinc finger protein 18 isoform X1

    UniProtKB/TrEMBL
    A0A6P3TWV3
    Conserved Domains (5) summary
    cd07765
    Location:221 → 249
    KRAB_A-box; KRAB (Kruppel-associated box) domain -A box
    COG5048
    Location:309 → 539
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:462 → 482
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:475 → 499
    zf-H2C2_2; Zinc-finger double domain
    cl02605
    Location:37 → 148
    SCAN; SCAN oligomerization domain
Nucleotide Protein Strain
Heading Accession and Version

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