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TRMT13 tRNA methyltransferase 13 homolog [ Ovis aries (sheep) ]

Gene ID: 101112862, updated on 8-Mar-2024

Summary

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Gene symbol
TRMT13
Gene description
tRNA methyltransferase 13 homolog
See related
EnsemblRapid:ENSOARG00020002056
Gene type
protein coding
RefSeq status
MODEL
Organism
Ovis aries
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Caprinae; Ovis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2023_10 current ARS-UI_Ramb_v3.0 (GCF_016772045.2) 1 NC_056054.1 (77496781..77516306)

Chromosome 1 - NC_056054.1Genomic Context describing neighboring genes Neighboring gene major facilitator superfamily domain containing 14A Neighboring gene SAS-6 centriolar assembly protein Neighboring gene leucine rich repeat containing 39 Neighboring gene AT-rich interactive domain-containing protein 3A-like Neighboring gene dihydrolipoamide branched chain transacylase E2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_056054.1 Chromosome 1 Reference ARS-UI_Ramb_v3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables tRNA 2'-O-methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tRNA methylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tRNA:m(4)X modification enzyme TRM13 homolog
Names
tRNA guanosine-2'-O-methyltransferase TRM13 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_016772045.2-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UI_Ramb_v3.0 Primary Assembly

Genomic

  1. NC_056054.1 Reference ARS-UI_Ramb_v3.0 Primary Assembly

    Range
    77496781..77516306
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015092137.4 → XP_014947623.1  tRNA:m(4)X modification enzyme TRM13 homolog isoform X4

    Conserved Domains (2) summary
    pfam05206
    Location:117 → 421
    TRM13; Methyltransferase TRM13
    pfam05253
    Location:11 → 32
    zf-U11-48K; U11-48K-like CHHC zinc finger

  2. XM_042251350.2 → XP_042107284.1  tRNA:m(4)X modification enzyme TRM13 homolog isoform X6

  3. XM_015092136.4 → XP_014947622.1  tRNA:m(4)X modification enzyme TRM13 homolog isoform X1

    UniProtKB/TrEMBL
    A0A6P3YIE5, W5Q9B4
    Related
    ENSOARP00020048393.1, ENSOART00020064309.1
    Conserved Domains (3) summary
    pfam05206
    Location:165 → 469
    TRM13; Methyltransferase TRM13
    pfam05253
    Location:59 → 80
    zf-U11-48K; U11-48K-like CHHC zinc finger
    pfam11722
    Location:17 → 45
    zf-TRM13_CCCH; CCCH zinc finger in TRM13 protein

  4. XM_042251347.2 → XP_042107281.1  tRNA:m(4)X modification enzyme TRM13 homolog isoform X5

    Related
    ENSOARP00020002607.2, ENSOART00020003146.2

  5. XM_027972341.3 → XP_027828142.1  tRNA:m(4)X modification enzyme TRM13 homolog isoform X2

    UniProtKB/TrEMBL
    A0A6P7EAF2
    Conserved Domains (2) summary
    pfam05206
    Location:137 → 441
    TRM13; Methyltransferase TRM13
    pfam05253
    Location:31 → 52
    zf-U11-48K; U11-48K-like CHHC zinc finger

  6. XM_060412111.1 → XP_060268094.1  tRNA:m(4)X modification enzyme TRM13 homolog isoform X3

RNA

  1. XR_009599824.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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