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gata2b GATA binding protein 2b [ Takifugu rubripes (torafugu) ]

Gene ID: 101062042, updated on 12-Sep-2024

Summary

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Gene symbol
gata2b
Gene description
GATA binding protein 2b
See related
Ensembl:ENSTRUG00000024174
Gene type
protein coding
RefSeq status
MODEL
Organism
Takifugu rubripes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Tetraodontiformes; Tetradontoidea; Tetraodontidae; Takifugu
Also known as
gata2
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: 19
Exon count:
7
Annotation release Status Assembly Chr Location
103 current fTakRub1.2 (GCF_901000725.2) 19 NC_042303.1 (7836208..7842173, complement)
101 previous assembly FUGU5 (GCF_000180615.1) 19 NC_018908.1 (4562947..4568681, complement)

Chromosome 19 - NC_042303.1Genomic Context describing neighboring genes Neighboring gene RuvB-like AAA ATPase 1 Neighboring gene eukaryotic elongation factor, selenocysteine-tRNA-specific Neighboring gene fibroleukin-like Neighboring gene ras-related protein rab7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell fate commitment IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of angiogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of miRNA transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
endothelial transcription factor GATA-2
Names
GATA binding protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Takifugu rubripes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fTakRub1.2 Primary Assembly

Genomic

  1. NC_042303.1 Reference fTakRub1.2 Primary Assembly

    Range
    7836208..7842173 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011613774.2 → XP_011612076.1  endothelial transcription factor GATA-2 isoform X1

    UniProtKB/TrEMBL
    A0A3B5JVZ9
    Related
    ENSTRUP00000048863.1, ENSTRUT00000054658.2
    Conserved Domains (1) summary
    cd00202
    Location:346 → 395
    ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

  2. XM_003973173.3 → XP_003973222.1  endothelial transcription factor GATA-2 isoform X2

    UniProtKB/TrEMBL
    A0A3B5K827
    Related
    ENSTRUP00000049510.1, ENSTRUT00000053381.2
    Conserved Domains (1) summary
    cd00202
    Location:330 → 379
    ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C
Nucleotide Protein
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