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TCEA3 transcription elongation factor A3 [ Saimiri boliviensis (Bolivian squirrel monkey) ]

Gene ID: 101043887, updated on 8-Mar-2024

Summary

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Gene symbol
TCEA3
Gene description
transcription elongation factor A3
See related
EnsemblRapid:ENSSBOG00000018702
Gene type
protein coding
RefSeq status
MODEL
Organism
Saimiri boliviensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Saimiriinae; Saimiri
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
102 current BCM_Sbol_2.0 (GCF_016699345.1) Unplaced Scaffold NW_024100927.1 (65983192..66027315)

NW_024100927.1Genomic Context describing neighboring genes Neighboring gene E2F transcription factor 2 Neighboring gene ArfGAP with SH3 domain, ankyrin repeat and PH domain 3 Neighboring gene coiled-coil domain-containing protein 86-like Neighboring gene 60S ribosomal protein L7-like 1 Neighboring gene putative uncharacterized protein ZNF436-AS1 Neighboring gene zinc finger protein 436 Neighboring gene heterogeneous nuclear ribonucleoprotein R

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024100927 Unplaced Scaffold Reference BCM_Sbol_2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription elongation by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription elongation factor A protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Saimiri boliviensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BCM_Sbol_2.0 Primary Assembly

Genomic

  1. NW_024100927.1 Reference BCM_Sbol_2.0 Primary Assembly

    Range
    65983192..66027315
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010345460.2 → XP_010343762.1  transcription elongation factor A protein 3 isoform X2

    UniProtKB/TrEMBL
    A0A2K6SAJ6
    Conserved Domains (4) summary
    smart00509
    Location:7 → 77
    TFS2N; Domain in the N-terminus of transcription elongation factor S-II (and elsewhere)
    cd13749
    Location:297 → 343
    Zn-ribbon_TFIIS; domain III/zinc ribbon domain of Transcription Factor IIS
    TIGR01385
    Location:14 → 344
    TFSII; transcription elongation factor S-II
    pfam07500
    Location:181 → 288
    TFIIS_M; Transcription factor S-II (TFIIS), central domain

  2. XM_003934880.2 → XP_003934929.1  transcription elongation factor A protein 3 isoform X1

    See identical proteins and their annotated locations for XP_003934929.1

    UniProtKB/TrEMBL
    A0A2K6SAJ6, A0A2K6SAK5
    Related
    ENSSBOP00000004403.1, ENSSBOT00000020792.2
    Conserved Domains (4) summary
    cd00183
    Location:4 → 80
    TFIIS_I; N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme
    cd13749
    Location:301 → 347
    Zn-ribbon_TFIIS; domain III/zinc ribbon domain of Transcription Factor IIS
    TIGR01385
    Location:5 → 348
    TFSII; transcription elongation factor S-II
    pfam07500
    Location:185 → 292
    TFIIS_M; Transcription factor S-II (TFIIS), central domain
Nucleotide Protein
Heading Accession and Version

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