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SNX13 sorting nexin 13 [ Papio anubis (olive baboon) ]

Gene ID: 101025587, updated on 8-Mar-2024

Summary

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Gene symbol
SNX13
Gene description
sorting nexin 13
See related
Ensembl:ENSPANG00000004971
Gene type
protein coding
RefSeq status
MODEL
Organism
Papio anubis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Papio
Orthologs
human mouse all
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Genomic context

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See SNX13 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
30
Annotation release Status Assembly Chr Location
104 current Panubis1.0 (GCF_008728515.1) 4 NC_044979.1 (87913258..88073312, complement)
103 previous assembly Panu_3.0 (GCF_000264685.3) 3 NC_018154.2 (93379346..93546926)

Chromosome 4 - NC_044979.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103883014 Neighboring gene uncharacterized LOC103883010 Neighboring gene uncharacterized LOC103883008 Neighboring gene mitochondrial rRNA methyltransferase 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphatidylinositol binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in early endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sorting nexin-13

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Papio anubis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Panubis1.0 Primary Assembly

Genomic

  1. NC_044979.1 Reference Panubis1.0 Primary Assembly

    Range
    87913258..88073312 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017956876.3 → XP_017812365.1  sorting nexin-13 isoform X4

    UniProtKB/TrEMBL
    A0A2I3MEZ5
    Related
    ENSPANP00000034367.2, ENSPANT00000041036.2
    Conserved Domains (4) summary
    cd06873
    Location:557 → 687
    PX_SNX13; The phosphoinositide binding Phox Homology domain of Sorting Nexin 13
    cd08719
    Location:377 → 511
    RGS_SNX13; Regulator of G protein signaling (RGS) domain found in the Sorting Nexin 13 (SNX13) protein
    smart00313
    Location:97 → 284
    PXA; Domain associated with PX domains
    pfam08628
    Location:803 → 900
    Nexin_C; Sorting nexin C terminal

  2. XM_009203289.2 → XP_009201553.1  sorting nexin-13 isoform X3

    UniProtKB/TrEMBL
    A0A8I5QZ58
    Conserved Domains (4) summary
    cd08719
    Location:377 → 511
    RGS_SNX13; Regulator of G protein signaling (RGS) domain found in the Sorting Nexin 13 (SNX13) protein
    smart00313
    Location:97 → 284
    PXA; Domain associated with PX domains
    pfam08628
    Location:767 → 875
    Nexin_C; Sorting nexin C terminal
    cl02563
    Location:557 → 651
    PX_domain; The Phox Homology domain, a phosphoinositide binding module

  3. XM_009203292.4 → XP_009201556.1  sorting nexin-13 isoform X5

    See identical proteins and their annotated locations for XP_009201556.1

    UniProtKB/TrEMBL
    A0A8I5R618
    Conserved Domains (4) summary
    cd06873
    Location:557 → 687
    PX_SNX13; The phosphoinositide binding Phox Homology domain of Sorting Nexin 13
    cd08719
    Location:377 → 511
    RGS_SNX13; Regulator of G protein signaling (RGS) domain found in the Sorting Nexin 13 (SNX13) protein
    smart00313
    Location:97 → 284
    PXA; Domain associated with PX domains
    pfam08628
    Location:803 → 911
    Nexin_C; Sorting nexin C terminal

  4. XM_003896239.4 → XP_003896288.1  sorting nexin-13 isoform X1

    See identical proteins and their annotated locations for XP_003896288.1

    UniProtKB/TrEMBL
    A0A8I5N909, A0A8I5R618
    Related
    ENSPANP00000048636.1, ENSPANT00000074355.1
    Conserved Domains (4) summary
    cd06873
    Location:557 → 676
    PX_SNX13; The phosphoinositide binding Phox Homology domain of Sorting Nexin 13
    cd08719
    Location:377 → 511
    RGS_SNX13; Regulator of G protein signaling (RGS) domain found in the Sorting Nexin 13 (SNX13) protein
    smart00313
    Location:97 → 284
    PXA; Domain associated with PX domains
    pfam08628
    Location:792 → 900
    Nexin_C; Sorting nexin C terminal

  5. XM_009203288.3 → XP_009201552.1  sorting nexin-13 isoform X2

    See identical proteins and their annotated locations for XP_009201552.1

    UniProtKB/TrEMBL
    A0A8I5R618
    Related
    ENSPANP00000050945.1, ENSPANT00000078500.1
    Conserved Domains (4) summary
    cd06873
    Location:522 → 652
    PX_SNX13; The phosphoinositide binding Phox Homology domain of Sorting Nexin 13
    smart00313
    Location:97 → 284
    PXA; Domain associated with PX domains
    pfam08628
    Location:768 → 876
    Nexin_C; Sorting nexin C terminal
    cl02565
    Location:377 → 476
    RGS; Regulator of G protein signaling (RGS) domain superfamily

  6. XM_017956877.2 → XP_017812366.1  sorting nexin-13 isoform X6

    UniProtKB/TrEMBL
    A0A8I5NQC6
    Conserved Domains (4) summary
    cd06873
    Location:477 → 607
    PX_SNX13; The phosphoinositide binding Phox Homology domain of Sorting Nexin 13
    cd08719
    Location:297 → 431
    RGS_SNX13; Regulator of G protein signaling (RGS) domain found in the Sorting Nexin 13 (SNX13) protein
    smart00313
    Location:17 → 204
    PXA; Domain associated with PX domains
    pfam08628
    Location:723 → 831
    Nexin_C; Sorting nexin C terminal

  7. XM_009203290.3 → XP_009201554.1  sorting nexin-13 isoform X6

    See identical proteins and their annotated locations for XP_009201554.1

    UniProtKB/TrEMBL
    A0A8I5NQC6
    Related
    ENSPANP00000055977.1, ENSPANT00000069724.1
    Conserved Domains (4) summary
    cd06873
    Location:477 → 607
    PX_SNX13; The phosphoinositide binding Phox Homology domain of Sorting Nexin 13
    cd08719
    Location:297 → 431
    RGS_SNX13; Regulator of G protein signaling (RGS) domain found in the Sorting Nexin 13 (SNX13) protein
    smart00313
    Location:17 → 204
    PXA; Domain associated with PX domains
    pfam08628
    Location:723 → 831
    Nexin_C; Sorting nexin C terminal

  8. XM_021935967.2 → XP_021791659.1  sorting nexin-13 isoform X6

    UniProtKB/TrEMBL
    A0A8I5NQC6
    Conserved Domains (4) summary
    cd06873
    Location:477 → 607
    PX_SNX13; The phosphoinositide binding Phox Homology domain of Sorting Nexin 13
    cd08719
    Location:297 → 431
    RGS_SNX13; Regulator of G protein signaling (RGS) domain found in the Sorting Nexin 13 (SNX13) protein
    smart00313
    Location:17 → 204
    PXA; Domain associated with PX domains
    pfam08628
    Location:723 → 831
    Nexin_C; Sorting nexin C terminal

RNA

  1. XR_002521035.2 RNA Sequence

  2. XR_645034.2 RNA Sequence

  3. XR_002521033.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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