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SSBP4 single stranded DNA binding protein 4 [ Papio anubis (olive baboon) ]

Gene ID: 101014629, updated on 8-Mar-2024

Summary

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Gene symbol
SSBP4
Gene description
single stranded DNA binding protein 4
See related
Ensembl:ENSPANG00000008549
Gene type
protein coding
RefSeq status
MODEL
Organism
Papio anubis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Papio
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 20
Exon count:
19
Annotation release Status Assembly Chr Location
104 current Panubis1.0 (GCF_008728515.1) 20 NC_044995.1 (33652161..33667892, complement)
103 previous assembly Panu_3.0 (GCF_000264685.3) 19 NC_018170.2 (16975087..16990982)

Chromosome 20 - NC_044995.1Genomic Context describing neighboring genes Neighboring gene elongation factor for RNA polymerase II Neighboring gene uncharacterized LOC103879989 Neighboring gene inositol-3-phosphate synthase 1 Neighboring gene leucine rich repeat containing 25 Neighboring gene growth differentiation factor 15

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables single-stranded DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
single-stranded DNA-binding protein 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Papio anubis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Panubis1.0 Primary Assembly

Genomic

  1. NC_044995.1 Reference Panubis1.0 Primary Assembly

    Range
    33652161..33667892 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021930907.1 → XP_021786599.1  single-stranded DNA-binding protein 4 isoform X6

    Conserved Domains (1) summary
    pfam04503
    Location:77 → 333
    SSDP; Single-stranded DNA binding protein, SSDP

  2. XM_021930906.1 → XP_021786598.1  single-stranded DNA-binding protein 4 isoform X2

    Conserved Domains (1) summary
    pfam04503
    Location:77 → 355
    SSDP; Single-stranded DNA binding protein, SSDP

  3. XM_009193881.2 → XP_009192145.1  single-stranded DNA-binding protein 4 isoform X7

    UniProtKB/TrEMBL
    A0A2I3N4J7
    Related
    ENSPANP00000042800.1, ENSPANT00000051418.2
    Conserved Domains (3) summary
    smart00667
    Location:18 → 44
    LisH; Lissencephaly type-1-like homology motif
    pfam04503
    Location:82 → 338
    SSDP; Single-stranded DNA binding protein, SSDP
    pfam04959
    Location:121 → 195
    ARS2; Arsenite-resistance protein 2

  4. XM_009193880.2 → XP_009192144.1  single-stranded DNA-binding protein 4 isoform X4

    Conserved Domains (3) summary
    smart00667
    Location:18 → 44
    LisH; Lissencephaly type-1-like homology motif
    pfam04503
    Location:82 → 338
    SSDP; Single-stranded DNA binding protein, SSDP
    pfam04959
    Location:121 → 195
    ARS2; Arsenite-resistance protein 2

  5. XM_009193879.2 → XP_009192143.1  single-stranded DNA-binding protein 4 isoform X3

    Conserved Domains (2) summary
    smart00667
    Location:18 → 44
    LisH; Lissencephaly type-1-like homology motif
    pfam04503
    Location:82 → 348
    SSDP; Single-stranded DNA binding protein, SSDP

  6. XM_009193878.2 → XP_009192142.1  single-stranded DNA-binding protein 4 isoform X1

    Conserved Domains (2) summary
    smart00667
    Location:18 → 44
    LisH; Lissencephaly type-1-like homology motif
    pfam04503
    Location:82 → 360
    SSDP; Single-stranded DNA binding protein, SSDP

  7. XM_003915177.4 → XP_003915226.1  single-stranded DNA-binding protein 4 isoform X5

    UniProtKB/TrEMBL
    A0A0A0MUD1
    Related
    ENSPANP00000001276.1, ENSPANT00000019531.3
    Conserved Domains (2) summary
    smart00667
    Location:18 → 44
    LisH; Lissencephaly type-1-like homology motif
    pfam04503
    Location:82 → 360
    SSDP; Single-stranded DNA binding protein, SSDP
Nucleotide Protein
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