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ZNF41 zinc finger protein 41 [ Pan paniscus (pygmy chimpanzee) ]

Gene ID: 100988768, updated on 8-Mar-2024

Summary

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Gene symbol
ZNF41
Gene description
zinc finger protein 41
See related
Ensembl:ENSPPAG00000035075
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan paniscus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human all
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Genomic context

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Location:
chromosome: X
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanPan1-v2.0_pri (GCF_029289425.2) X NC_073272.2 (49074354..49112547, complement)
RS_2023_05 previous assembly NHGRI_mPanPan1-v1.1-0.1.freeze_pri (GCF_029289425.1) X NC_073272.1 (49076095..49115919, complement)

Chromosome X - NC_073272.2Genomic Context describing neighboring genes Neighboring gene zinc finger protein 157 Neighboring gene small nucleolar RNA SNORA11 Neighboring gene nucleophosmin-like Neighboring gene uncharacterized LOC134729774 Neighboring gene small nucleolar RNA SNORA51 Neighboring gene A-Raf proto-oncogene, serine/threonine kinase Neighboring gene synapsin I Neighboring gene TIMP metallopeptidase inhibitor 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein 41

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029289425.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

Genomic

  1. NC_073272.2 Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

    Range
    49074354..49112547 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008964546.6 → XP_008962794.1  zinc finger protein 41 isoform X4

    See identical proteins and their annotated locations for XP_008962794.1

    Conserved Domains (2) summary
    COG5048
    Location:218 → 640
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:327 → 347
    ZF_C2H2; C2H2 Zn finger [structural motif]

  2. XM_034949374.3 → XP_034805265.1  zinc finger protein 41 isoform X4

    Conserved Domains (2) summary
    COG5048
    Location:218 → 640
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:327 → 347
    ZF_C2H2; C2H2 Zn finger [structural motif]

  3. XM_057301056.2 → XP_057157039.1  zinc finger protein 41 isoform X3

    UniProtKB/TrEMBL
    A0A2R9B6G9

  4. XM_057301053.2 → XP_057157036.1  zinc finger protein 41 isoform X2

  5. XM_008964536.6 → XP_008962784.1  zinc finger protein 41 isoform X1

    See identical proteins and their annotated locations for XP_008962784.1

    Conserved Domains (6) summary
    smart00349
    Location:37 → 97
    KRAB; krueppel associated box
    COG5048
    Location:314 → 736
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:423 → 443
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:645 → 667
    zf-C2H2; Zinc finger, C2H2 type
    pfam01352
    Location:37 → 76
    KRAB; KRAB box
    pfam13465
    Location:604 → 628
    zf-H2C2_2; Zinc-finger double domain

  6. XM_057301054.2 → XP_057157037.1  zinc finger protein 41 isoform X3

    UniProtKB/TrEMBL
    A0A2R9B6G9

  7. XM_024927304.4 → XP_024783072.1  zinc finger protein 41 isoform X2

    Conserved Domains (3) summary
    smart00349
    Location:29 → 89
    KRAB; krueppel associated box
    COG5048
    Location:306 → 728
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:415 → 435
    ZF_C2H2; C2H2 Zn finger [structural motif]

  8. XM_008964535.6 → XP_008962783.1  zinc finger protein 41 isoform X1

    See identical proteins and their annotated locations for XP_008962783.1

    Conserved Domains (6) summary
    smart00349
    Location:37 → 97
    KRAB; krueppel associated box
    COG5048
    Location:314 → 736
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:423 → 443
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:645 → 667
    zf-C2H2; Zinc finger, C2H2 type
    pfam01352
    Location:37 → 76
    KRAB; KRAB box
    pfam13465
    Location:604 → 628
    zf-H2C2_2; Zinc-finger double domain

  9. XM_008964544.6 → XP_008962792.1  zinc finger protein 41 isoform X4

    See identical proteins and their annotated locations for XP_008962792.1

    Conserved Domains (2) summary
    COG5048
    Location:218 → 640
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:327 → 347
    ZF_C2H2; C2H2 Zn finger [structural motif]

  10. XM_055106190.2 → XP_054962165.1  zinc finger protein 41 isoform X1

  11. XM_057301055.2 → XP_057157038.1  zinc finger protein 41 isoform X3

    UniProtKB/TrEMBL
    A0A2R9B6G9

  12. XM_063601690.1 → XP_063457760.1  zinc finger protein 41 isoform X2

  13. XM_055106188.2 → XP_054962163.1  zinc finger protein 41 isoform X1

  14. XM_055106187.2 → XP_054962162.1  zinc finger protein 41 isoform X1

  15. XM_055106193.2 → XP_054962168.1  zinc finger protein 41 isoform X3

    UniProtKB/TrEMBL
    A0A2R9B6G9

  16. XM_008964543.6 → XP_008962791.1  zinc finger protein 41 isoform X4

    See identical proteins and their annotated locations for XP_008962791.1

    Conserved Domains (2) summary
    COG5048
    Location:218 → 640
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:327 → 347
    ZF_C2H2; C2H2 Zn finger [structural motif]

  17. XM_063601691.1 → XP_063457761.1  zinc finger protein 41 isoform X2

  18. XM_003812136.7 → XP_003812184.1  zinc finger protein 41 isoform X3

    See identical proteins and their annotated locations for XP_003812184.1

    UniProtKB/TrEMBL
    A0A2R9B6G9
    Conserved Domains (3) summary
    smart00349
    Location:27 → 87
    KRAB; krueppel associated box
    COG5048
    Location:304 → 726
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:413 → 433
    ZF_C2H2; C2H2 Zn finger [structural motif]

  19. XM_063601689.1 → XP_063457759.1  zinc finger protein 41 isoform X2

  20. XM_055106186.2 → XP_054962161.1  zinc finger protein 41 isoform X1

  21. XM_063601692.1 → XP_063457762.1  zinc finger protein 41 isoform X2

  22. XM_055106192.2 → XP_054962167.1  zinc finger protein 41 isoform X1

  23. XM_055106189.2 → XP_054962164.1  zinc finger protein 41 isoform X1

  24. XM_055106194.2 → XP_054962169.1  zinc finger protein 41 isoform X4

Nucleotide Protein
Heading Accession and Version

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