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HIF3A hypoxia inducible factor 3 subunit alpha [ Pan paniscus (pygmy chimpanzee) ]

Gene ID: 100979253, updated on 6-Jun-2024

Summary

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Gene symbol
HIF3A
Gene description
hypoxia inducible factor 3 subunit alpha
See related
Ensembl:ENSPPAG00000042427
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan paniscus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 20
Exon count:
18
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanPan1-v2.0_pri (GCF_029289425.2) 20 NC_073269.2 (52400319..52483212)
RS_2023_05 previous assembly NHGRI_mPanPan1-v1.1-0.1.freeze_pri (GCF_029289425.1) 19 NC_073268.1 (54307702..54354329)

Chromosome 20 - NC_073269.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC129394706 Neighboring gene IGF like family member 2 Neighboring gene U6 spliceosomal RNA Neighboring gene protein phosphatase 5 catalytic subunit Neighboring gene coiled-coil domain containing 8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellular response to hypoxia IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hypoxia-inducible factor 3-alpha
Names
hypoxia inducible factor 3 alpha subunit

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029289425.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

Genomic

  1. NC_073269.2 Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

    Range
    52400319..52483212
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063600421.1 → XP_063456491.1  hypoxia-inducible factor 3-alpha isoform X3

    UniProtKB/TrEMBL
    A0A2R9CBZ3

  2. XM_034946873.3 → XP_034802764.2  hypoxia-inducible factor 3-alpha isoform X1

    UniProtKB/TrEMBL
    A0A2R9CBZ3

  3. XM_003817493.6 → XP_003817541.3  hypoxia-inducible factor 3-alpha isoform X4

    UniProtKB/TrEMBL
    A0A2R9CBZ3, A0A2R9CMU0

  4. XM_055103327.2 → XP_054959302.2  hypoxia-inducible factor 3-alpha isoform X9

  5. XM_024926765.4 → XP_024782533.3  hypoxia-inducible factor 3-alpha isoform X5

    UniProtKB/TrEMBL
    A0A2R9CC04

  6. XM_055103325.2 → XP_054959300.2  hypoxia-inducible factor 3-alpha isoform X7

    UniProtKB/TrEMBL
    A0A2R9CC04, A0A2R9CC54

  7. XM_055103324.2 → XP_054959299.2  hypoxia-inducible factor 3-alpha isoform X2

    UniProtKB/TrEMBL
    A0A2R9CBZ3

  8. XM_055103328.2 → XP_054959303.2  hypoxia-inducible factor 3-alpha isoform X9

  9. XM_055103326.2 → XP_054959301.2  hypoxia-inducible factor 3-alpha isoform X8

    UniProtKB/TrEMBL
    A0A2R9CBZ3

  10. XM_057300561.2 → XP_057156544.2  hypoxia-inducible factor 3-alpha isoform X7

    UniProtKB/TrEMBL
    A0A2R9CC04, A0A2R9CC54

  11. XM_024926766.4 → XP_024782534.3  hypoxia-inducible factor 3-alpha isoform X5

    UniProtKB/TrEMBL
    A0A2R9CC04

  12. XM_063600422.1 → XP_063456492.1  hypoxia-inducible factor 3-alpha isoform X6

    UniProtKB/TrEMBL
    A0A2R9CC04
Nucleotide Protein
Heading Accession and Version

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