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IRX1 iroquois homeobox 1 [ Otolemur garnettii (small-eared galago) ]

Gene ID: 100941204, updated on 8-Mar-2024

Summary

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Gene symbol
IRX1
Gene description
iroquois homeobox 1
See related
Ensembl:ENSOGAG00000024732
Gene type
protein coding
RefSeq status
MODEL
Organism
Otolemur garnettii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Strepsirrhini; Lorisiformes; Galagidae; Otolemur
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
102 current OtoGar3 (GCF_000181295.1) Unplaced Scaffold NW_003852583.1 (298443..303947)

NW_003852583.1Genomic Context describing neighboring genes Neighboring gene U1 spliceosomal RNA Neighboring gene ADAM metallopeptidase with thrombospondin type 1 motif 16 Neighboring gene U6 spliceosomal RNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003852583 Unplaced Scaffold Reference OtoGar3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neuron differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
iroquois-class homeodomain protein IRX-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Otolemur garnettii Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference OtoGar3

Genomic

  1. NW_003852583.1 Reference OtoGar3

    Range
    298443..303947
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003800887.2 → XP_003800935.1  iroquois-class homeodomain protein IRX-1

    UniProtKB/TrEMBL
    H0XRR4
    Related
    ENSOGAP00000018806.1, ENSOGAT00000027336.1
    Conserved Domains (3) summary
    smart00548
    Location:309 → 326
    IRO; Motif in Iroquois-class homeodomain proteins (only). Unknown function
    pfam05920
    Location:145 → 184
    Homeobox_KN; Homeobox KN domain
    cl01319
    Location:188 → 247
    HARE-HTH; HB1, ASXL, restriction endonuclease HTH domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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