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UBE3D ubiquitin protein ligase E3D [ Sarcophilus harrisii (Tasmanian devil) ]

Gene ID: 100932540, updated on 8-Mar-2024

Summary

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Gene symbol
UBE3D
Gene description
ubiquitin protein ligase E3D
See related
Ensembl:ENSSHAG00000015531
Gene type
protein coding
RefSeq status
MODEL
Organism
Sarcophilus harrisii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Dasyuromorphia; Dasyuridae; Sarcophilus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 4
Exon count:
10
Annotation release Status Assembly Chr Location
103 current mSarHar1.11 (GCF_902635505.1) 4 NC_045429.1 (224432559..224637438)
102 previous assembly Devil_ref v7.0 (GCF_000189315.1) 4 Unlocalized Scaffold NW_003838925.1 (1690451..1832549, complement)

Chromosome 4 - NC_045429.1Genomic Context describing neighboring genes Neighboring gene phosphoglucomutase 3 Neighboring gene DOP1 leucine zipper like protein A Neighboring gene arfaptin-1 pseudogene Neighboring gene AP-3 complex subunit sigma-2 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cyclin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin conjugating enzyme binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein autoubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein monoubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein polyubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of ubiquitin ligase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase E3D

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sarcophilus harrisii Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mSarHar1.11 Primary Assembly

Genomic

  1. NC_045429.1 Reference mSarHar1.11 Primary Assembly

    Range
    224432559..224637438
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031964590.1 → XP_031820450.1  E3 ubiquitin-protein ligase E3D

    UniProtKB/TrEMBL
    A0A7N4NJQ7, G3WS93
    Related
    ENSSHAP00000018298.2, ENSSHAT00000018448.2
    Conserved Domains (1) summary
    pfam09814
    Location:6 → 371
    HECT_2; HECT-like Ubiquitin-conjugating enzyme (E2)-binding
Nucleotide Protein
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