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TUBB4A tubulin beta 4A class IVa [ Canis lupus familiaris (dog) ]

Gene ID: 100855815, updated on 8-Mar-2024

Summary

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Official Symbol
TUBB4Aprovided by VGNC
Official Full Name
tubulin beta 4A class IVaprovided by VGNC
Primary source
VGNC:VGNC:47989
See related
Ensembl:ENSCAFG00845010611
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Also known as
TUBB4
Orthologs
human mouse all
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Genomic context

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See TUBB4A in Genome Data Viewer
Location:
chromosome: 20
Exon count:
5
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 20 NC_051824.1 (54351606..54356870)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 20 NC_006602.4 (53444670..53449928)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 20 NC_049241.1 (54095881..54101133)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 20 NC_049280.1 (53418321..53423724)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 20 NC_049761.1 (53866868..53871927)

Chromosome 20 - NC_051824.1Genomic Context describing neighboring genes Neighboring gene ORM1-like protein 2 Neighboring gene TNF superfamily member 9 Neighboring gene DENN domain containing 1C Neighboring gene crumbs cell polarity complex component 3 Neighboring gene solute carrier family 25 member 23

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in microtubule cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitotic cell cycle IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in microtubule IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: tubulin beta-4A chain; tubulin beta-4A chain
Names
class IVa beta-tubulin
tubulin, beta 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051824.1 Reference ROS_Cfam_1.0

    Range
    54351606..54356870
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038428863.1 → XP_038284791.1  tubulin beta-4A chain isoform X1

    UniProtKB/TrEMBL
    A0A8C0L3X1, A0A8C0NXL6, A0A8C0NY69, A0A8I3NFI7
    Related
    ENSCAFP00845014603.1, ENSCAFT00845018708.1
    Conserved Domains (1) summary
    PLN00220
    Location:1 → 427
    PLN00220; tubulin beta chain; Provisional

  2. XM_038428864.1 → XP_038284792.1  tubulin beta-4A chain isoform X2

    UniProtKB/TrEMBL
    A0A8C0KYU5
    Conserved Domains (1) summary
    PLN00220
    Location:41 → 375
    PLN00220; tubulin beta chain; Provisional

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049280.1 Alternate UMICH_Zoey_3.1

    Range
    53418321..53423724
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038504492.1 → XP_038360420.1  LOW QUALITY PROTEIN: tubulin beta-4A chain isoform X1

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049761.1 Alternate UNSW_CanFamBas_1.0

    Range
    53866868..53871927
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038631691.1 → XP_038487619.1  tubulin beta-4A chain isoform X1

  2. XM_038631692.1 → XP_038487620.1  tubulin beta-4A chain isoform X2

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049241.1 Alternate UU_Cfam_GSD_1.0

    Range
    54095881..54101133
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038567541.1 → XP_038423469.1  LOW QUALITY PROTEIN: tubulin beta-4A chain isoform X1

    UniProtKB/TrEMBL
    A0A8C0L3X1, A0A8C0NXL6, A0A8C0NY69, A0A8I3NFI7
    Conserved Domains (1) summary
    PLN00220
    Location:1 → 427
    PLN00220; tubulin beta chain; Provisional

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006602.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    53444670..53449928
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005632973.4 → XP_005633030.1  tubulin beta-4A chain isoform X1

    See identical proteins and their annotated locations for XP_005633030.1

    UniProtKB/TrEMBL
    A0A8C0L3X1, A0A8C0NXL6, A0A8C0NY69, A0A8I3NFI7
    Conserved Domains (1) summary
    PLN00220
    Location:1 → 427
    PLN00220; tubulin beta chain; Provisional

  2. XM_038455355.1 → XP_038311283.1  tubulin beta-4A chain isoform X2

    UniProtKB/TrEMBL
    A0A8C0KYU5
    Conserved Domains (1) summary
    PLN00220
    Location:41 → 375
    PLN00220; tubulin beta chain; Provisional
Nucleotide Protein
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