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Trim47 tripartite motif containing 47 [ Cricetulus griseus (Chinese hamster) ]

Gene ID: 100758005, updated on 19-Jun-2024

Summary

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Gene symbol
Trim47
Gene description
tripartite motif containing 47
Locus tag
I79_014333
See related
Ensembl:ENSCGRG00015007179
Gene type
protein coding
RefSeq status
MODEL
Organism
Cricetulus griseus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus
Orthologs
human mouse all
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Genomic context

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See Trim47 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
9
Annotation release Status Assembly Chr Location
104 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003614300.1 (196267..210972, complement)
104 current CriGri-PICRH-1.0 (GCF_003668045.3) 7 NC_048600.1 (128694611..128699201, complement)

NW_003614300.1Genomic Context describing neighboring genes Neighboring gene unc-13 homolog D Neighboring gene WW domain binding protein 2 Neighboring gene tripartite motif containing 65 Neighboring gene mitochondrial ribosomal protein L38 Neighboring gene Fas binding factor 1 Neighboring gene small Cajal body-specific RNA 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing. Becker J, et al. J Biotechnol, 2011 Dec 10. PMID 21945585

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase TRIM47
Names
Tripartite motif-containing protein 47

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cricetulus griseus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CriGri_1.0 Primary Assembly

Genomic

  1. NW_003614300.1 Reference CriGri_1.0 Primary Assembly

    Range
    196267..210972 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035458682.1 → XP_035314573.1  E3 ubiquitin-protein ligase TRIM47 isoform X1

    Conserved Domains (1) summary
    cd15808
    Location:308 → 513
    SPRY_PRY_TRIM47; PRY/SPRY domain in tripartite motif-containing protein 47 (TRIM47), also known as RING finger protein 100 (RNF100) or Gene overexpressed in astrocytoma protein (GOA)

Alternate CriGri-PICRH-1.0

Genomic

  1. NC_048600.1 Alternate CriGri-PICRH-1.0

    Range
    128694611..128699201 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027425644.2 → XP_027281445.1  E3 ubiquitin-protein ligase TRIM47 isoform X2

    UniProtKB/TrEMBL
    A0A8C2N5G8
    Related
    ENSCGRP00015046612.1, ENSCGRT00015048401.1
Nucleotide Protein Strain
Heading Accession and Version

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