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Scmh1 Scm polycomb group protein homolog 1 [ Cricetulus griseus (Chinese hamster) ]

Gene ID: 100754510, updated on 8-Mar-2024

Summary

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Gene symbol
Scmh1
Gene description
Scm polycomb group protein homolog 1
Locus tag
I79_008248
See related
Ensembl:ENSCGRG00015003121
Gene type
protein coding
RefSeq status
MODEL
Organism
Cricetulus griseus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 2
Exon count:
20
Annotation release Status Assembly Chr Location
104 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003613862.1 (671210..823702, complement)
104 current CriGri-PICRH-1.0 (GCF_003668045.3) 2 NC_048595.1 (31615859..31770913, complement)

NW_003613862.1Genomic Context describing neighboring genes Neighboring gene myosin light polypeptide 6-like Neighboring gene CTP synthase 1 Neighboring gene schlafen like 1 Neighboring gene GRB2-associated-binding protein 2-like Neighboring gene forkhead box O6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing. Becker J, et al. J Biotechnol, 2011 Dec 10. PMID 21945585

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polycomb protein SCMH1
Names
sex comb on midleg homolog 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cricetulus griseus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CriGri_1.0 Primary Assembly

Genomic

  1. NW_003613862.1 Reference CriGri_1.0 Primary Assembly

    Range
    671210..823702 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035455449.1 → XP_035311340.1  polycomb protein SCMH1 isoform X1

    UniProtKB/TrEMBL
    A0A8C2MIF9, A0A8C2MJ90
    Conserved Domains (4) summary
    cd09578
    Location:591 → 661
    SAM_Scm; SAM domain of Scm proteins of Polycomb group
    smart00561
    Location:31 → 126
    MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2
    pfam12140
    Location:357 → 465
    SLED; SLED domain
    pfam17208
    Location:270 → 319
    RBR; RNA binding Region

  2. XM_027436179.2 → XP_027291980.1  polycomb protein SCMH1 isoform X4

    UniProtKB/TrEMBL
    A0A8C2MJ90, A0A9J7FCF1

  3. XM_035455450.1 → XP_035311341.1  polycomb protein SCMH1 isoform X2

    UniProtKB/TrEMBL
    A0A8C2MJ90, A0A9J7JUH2
    Conserved Domains (4) summary
    smart00561
    Location:31 → 126
    MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2
    pfam12140
    Location:357 → 465
    SLED; SLED domain
    pfam17208
    Location:270 → 319
    RBR; RNA binding Region
    cl15755
    Location:591 → 628
    SAM_superfamily; SAM (Sterile alpha motif )

  4. XM_027436175.2 → XP_027291976.1  polycomb protein SCMH1 isoform X1

    UniProtKB/TrEMBL
    A0A8C2MIF9, A0A8C2MJ90
    Conserved Domains (4) summary
    cd09578
    Location:591 → 661
    SAM_Scm; SAM domain of Scm proteins of Polycomb group
    smart00561
    Location:31 → 126
    MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2
    pfam12140
    Location:357 → 465
    SLED; SLED domain
    pfam17208
    Location:270 → 319
    RBR; RNA binding Region

  5. XM_027436176.2 → XP_027291977.1  polycomb protein SCMH1 isoform X1

    UniProtKB/TrEMBL
    A0A8C2MIF9, A0A8C2MJ90
    Conserved Domains (4) summary
    cd09578
    Location:591 → 661
    SAM_Scm; SAM domain of Scm proteins of Polycomb group
    smart00561
    Location:31 → 126
    MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2
    pfam12140
    Location:357 → 465
    SLED; SLED domain
    pfam17208
    Location:270 → 319
    RBR; RNA binding Region

  6. XM_016975291.3 → XP_016830780.1  polycomb protein SCMH1 isoform X1

    UniProtKB/TrEMBL
    A0A8C2MIF9, A0A8C2MJ90
    Conserved Domains (4) summary
    cd09578
    Location:591 → 661
    SAM_Scm; SAM domain of Scm proteins of Polycomb group
    smart00561
    Location:31 → 126
    MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2
    pfam12140
    Location:357 → 465
    SLED; SLED domain
    pfam17208
    Location:270 → 319
    RBR; RNA binding Region

  7. XM_027436177.2 → XP_027291978.1  polycomb protein SCMH1 isoform X1

    UniProtKB/TrEMBL
    A0A8C2MIF9, A0A8C2MJ90
    Conserved Domains (4) summary
    cd09578
    Location:591 → 661
    SAM_Scm; SAM domain of Scm proteins of Polycomb group
    smart00561
    Location:31 → 126
    MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2
    pfam12140
    Location:357 → 465
    SLED; SLED domain
    pfam17208
    Location:270 → 319
    RBR; RNA binding Region

  8. XM_027436178.2 → XP_027291979.1  polycomb protein SCMH1 isoform X3

    UniProtKB/TrEMBL
    A0A8C2MJ90, A0A9J7F9Z3

  9. XM_016975292.3 → XP_016830781.1  polycomb protein SCMH1 isoform X4

    UniProtKB/TrEMBL
    A0A8C2MJ90, A0A9J7FCF1

Alternate CriGri-PICRH-1.0

Genomic

  1. NC_048595.1 Alternate CriGri-PICRH-1.0

    Range
    31615859..31770913 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027399136.2 → XP_027254937.1  polycomb protein SCMH1 isoform X8

    UniProtKB/TrEMBL
    A0A8C2MJ90, A0A9J7FCF1

  2. XM_035439656.1 → XP_035295547.1  polycomb protein SCMH1 isoform X6

    UniProtKB/TrEMBL
    A0A8C2MJ90, A0A9J7JUH2
    Conserved Domains (4) summary
    smart00561
    Location:31 → 126
    MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2
    pfam12140
    Location:357 → 465
    SLED; SLED domain
    pfam17208
    Location:270 → 319
    RBR; RNA binding Region
    cl15755
    Location:591 → 628
    SAM_superfamily; SAM (Sterile alpha motif )

  3. XM_027399131.2 → XP_027254932.1  polycomb protein SCMH1 isoform X5

    UniProtKB/TrEMBL
    A0A8C2MIF9, A0A8C2MJ90
    Related
    ENSCGRP00015059802.1, ENSCGRT00015082615.1
    Conserved Domains (4) summary
    cd09578
    Location:591 → 661
    SAM_Scm; SAM domain of Scm proteins of Polycomb group
    smart00561
    Location:31 → 126
    MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2
    pfam12140
    Location:357 → 465
    SLED; SLED domain
    pfam17208
    Location:270 → 319
    RBR; RNA binding Region

  4. XM_027399132.2 → XP_027254933.1  polycomb protein SCMH1 isoform X5

    UniProtKB/TrEMBL
    A0A8C2MIF9, A0A8C2MJ90
    Conserved Domains (4) summary
    cd09578
    Location:591 → 661
    SAM_Scm; SAM domain of Scm proteins of Polycomb group
    smart00561
    Location:31 → 126
    MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2
    pfam12140
    Location:357 → 465
    SLED; SLED domain
    pfam17208
    Location:270 → 319
    RBR; RNA binding Region

  5. XM_027399133.2 → XP_027254934.1  polycomb protein SCMH1 isoform X5

    UniProtKB/TrEMBL
    A0A8C2MIF9, A0A8C2MJ90
    Related
    ENSCGRP00015003954.1, ENSCGRT00015004896.2
    Conserved Domains (4) summary
    cd09578
    Location:591 → 661
    SAM_Scm; SAM domain of Scm proteins of Polycomb group
    smart00561
    Location:31 → 126
    MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2
    pfam12140
    Location:357 → 465
    SLED; SLED domain
    pfam17208
    Location:270 → 319
    RBR; RNA binding Region

  6. XM_027399134.2 → XP_027254935.1  polycomb protein SCMH1 isoform X5

    UniProtKB/TrEMBL
    A0A8C2MIF9, A0A8C2MJ90
    Conserved Domains (4) summary
    cd09578
    Location:591 → 661
    SAM_Scm; SAM domain of Scm proteins of Polycomb group
    smart00561
    Location:31 → 126
    MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2
    pfam12140
    Location:357 → 465
    SLED; SLED domain
    pfam17208
    Location:270 → 319
    RBR; RNA binding Region

  7. XM_035439655.1 → XP_035295546.1  polycomb protein SCMH1 isoform X5

    UniProtKB/TrEMBL
    A0A8C2MIF9, A0A8C2MJ90
    Conserved Domains (4) summary
    cd09578
    Location:591 → 661
    SAM_Scm; SAM domain of Scm proteins of Polycomb group
    smart00561
    Location:31 → 126
    MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2
    pfam12140
    Location:357 → 465
    SLED; SLED domain
    pfam17208
    Location:270 → 319
    RBR; RNA binding Region

  8. XM_027399135.2 → XP_027254936.1  polycomb protein SCMH1 isoform X7

    UniProtKB/TrEMBL
    A0A8C2MJ90, A0A9J7F9Z3
    Related
    ENSCGRP00015003980.2, ENSCGRT00015004934.2

  9. XM_027399137.2 → XP_027254938.1  polycomb protein SCMH1 isoform X8

    UniProtKB/TrEMBL
    A0A8C2MJ90, A0A9J7FCF1
    Related
    ENSCGRP00015004001.2, ENSCGRT00015004957.2
Nucleotide Protein Strain
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