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Pspc1 paraspeckle component 1 [ Cricetulus griseus (Chinese hamster) ]

Gene ID: 100751937, updated on 8-Mar-2024

Summary

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Gene symbol
Pspc1
Gene description
paraspeckle component 1
See related
Ensembl:ENSCGRG00015013230
Gene type
protein coding
RefSeq status
MODEL
Organism
Cricetulus griseus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus
Orthologs
human mouse all
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Genomic context

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See Pspc1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
9
Annotation release Status Assembly Chr Location
104 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003613875.1 (85895..140276)
104 current CriGri-PICRH-1.0 (GCF_003668045.3) 1 Unlocalized Scaffold NW_023276807.1 (211792355..211846947, complement)

NW_003613875.1Genomic Context describing neighboring genes Neighboring gene zinc finger MYM-type containing 5 Neighboring gene M-phase phosphoprotein 8 Neighboring gene uncharacterized LOC118239684 Neighboring gene poly(ADP-ribose) polymerase family member 4 Neighboring gene 60S ribosomal protein L27a-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing. Becker J, et al. J Biotechnol, 2011 Dec 10. PMID 21945585

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
paraspeckle component 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cricetulus griseus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CriGri_1.0 Primary Assembly

Genomic

  1. NW_003613875.1 Reference CriGri_1.0 Primary Assembly

    Range
    85895..140276
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003502033.5 → XP_003502081.1  paraspeckle component 1

    See identical proteins and their annotated locations for XP_003502081.1

    UniProtKB/TrEMBL
    G3HDG6
    Conserved Domains (3) summary
    cd12949
    Location:226 → 319
    NOPS_PSPC1; NOPS domain, including C-terminal coiled-coil region, in paraspeckle protein component 1 (PSPC1) and similar proteins
    cd12586
    Location:80 → 150
    RRM1_PSP1; RNA recognition motif 1 in vertebrate paraspeckle protein 1 (PSP1)
    cd12589
    Location:156 → 235
    RRM2_PSP1; RNA recognition motif 2 in vertebrate paraspeckle protein 1 (PSP1 or PSPC1)

Alternate CriGri-PICRH-1.0

Genomic

  1. NW_023276807.1 Alternate CriGri-PICRH-1.0

    Range
    211792355..211846947 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027390506.2 → XP_027246307.1  paraspeckle component 1

    UniProtKB/TrEMBL
    G3HDG6
    Related
    ENSCGRP00015056224.1, ENSCGRT00015062143.1
Nucleotide Protein Strain
Heading Accession and Version

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