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ASTL astacin like metalloendopeptidase [ Sus scrofa (pig) ]

Gene ID: 100739686, updated on 8-Mar-2024

Summary

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Official Symbol
ASTLprovided by VGNC
Official Full Name
astacin like metalloendopeptidaseprovided by VGNC
Primary source
VGNC:VGNC:85592
See related
Ensembl:ENSSSCG00000008126
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Biased expression in ovary (RPKM 4.0) and spleen (RPKM 0.5) See more
Orthologs
human mouse all
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Genomic context

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See ASTL in Genome Data Viewer
Location:
chromosome: 3
Exon count:
9
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 3 NC_010445.4 (47058104..47071681)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 3 NC_010445.3 (49198467..49211812)

Chromosome 3 - NC_010445.4Genomic Context describing neighboring genes Neighboring gene transmembrane protein 127 Neighboring gene StAR related lipid transfer domain containing 7 Neighboring gene dual specificity phosphatase 2 Neighboring gene SH3 domain containing ring finger 3 Neighboring gene ectodysplasin A receptor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metalloendopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
astacin-like metalloendopeptidase
Names
astacin-like metallo-endopeptidase (M12 family)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010445.4 Reference Sscrofa11.1 Primary Assembly

    Range
    47058104..47071681
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003481133.4 → XP_003481181.2  astacin-like metalloendopeptidase

    UniProtKB/TrEMBL
    A0A8D1EA80
    Related
    ENSSSCP00000008676.2, ENSSSCT00000008902.4
    Conserved Domains (2) summary
    pfam01400
    Location:91 → 280
    Astacin; Astacin (Peptidase family M12A)
    cl00064
    Location:98 → 279
    ZnMc; Zinc-dependent metalloprotease. This super-family of metalloproteases contains two major branches, the astacin-like proteases and the adamalysin/reprolysin-like proteases. Both branches have wide phylogenetic distribution, and contain sub-families, which ...
Nucleotide Protein
Heading Accession and Version

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