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RNF115 ring finger protein 115 [ Sus scrofa (pig) ]

Gene ID: 100739432, updated on 8-Mar-2024

Summary

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Official Symbol
RNF115provided by VGNC
Official Full Name
ring finger protein 115provided by VGNC
Primary source
VGNC:VGNC:92348
See related
Ensembl:ENSSSCG00000037355
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in kidney (RPKM 7.8), heart (RPKM 7.8) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See RNF115 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
9
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 4 NC_010446.5 (99493172..99577946)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 4 NC_010446.4 (109134558..109212914)

Chromosome 4 - NC_010446.5Genomic Context describing neighboring genes Neighboring gene ankyrin repeat domain 35 Neighboring gene protein inhibitor of activated STAT 3 Neighboring gene nudix hydrolase 17 Neighboring gene RNA polymerase III subunit C Neighboring gene CD160 molecule Neighboring gene PDZ domain containing 1 Neighboring gene Golgi pH regulator

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase RNF115

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010446.5 Reference Sscrofa11.1 Primary Assembly

    Range
    99493172..99577946
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003481472.4 → XP_003481520.1  E3 ubiquitin-protein ligase RNF115

    UniProtKB/TrEMBL
    A0A287B0T0, A0A4X1SKR5, A0A8D1B8S9
    Related
    ENSSSCP00000050024.1, ENSSSCT00000053819.2
    Conserved Domains (2) summary
    pfam13639
    Location:216 → 258
    zf-RING_2; Ring finger domain
    pfam14369
    Location:19 → 49
    zinc_ribbon_9; zinc-ribbon
Nucleotide Protein
Heading Accession and Version

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