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CRLF1 cytokine receptor like factor 1 [ Sus scrofa (pig) ]

Gene ID: 100738750, updated on 8-Mar-2024

Summary

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Official Symbol
CRLF1provided by VGNC
Official Full Name
cytokine receptor like factor 1provided by VGNC
Primary source
VGNC:VGNC:86998
See related
Ensembl:ENSSSCG00000013909
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Broad expression in spleen (RPKM 6.6), lung (RPKM 4.3) and 5 other tissues See more
Orthologs
human mouse all
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Genomic context

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See CRLF1 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
9
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 2 NC_010444.4 (59222551..59233723)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 2 NC_010444.3 (59069084..59075048, complement)

Chromosome 2 - NC_010444.4Genomic Context describing neighboring genes Neighboring gene CREB regulated transcription coactivator 1 Neighboring gene 60S ribosomal protein L27a pseudogene Neighboring gene kelch like family member 26 Neighboring gene transmembrane protein 59 like Neighboring gene uncharacterized LOC106508380 Neighboring gene required for excision 1-B domain containing Neighboring gene ubiquitin A-52 residue ribosomal protein fusion product 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cytokine receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cytokine-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in external side of plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cytokine receptor-like factor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010444.4 Reference Sscrofa11.1 Primary Assembly

    Range
    59222551..59233723
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021083475.1 → XP_020939134.1  cytokine receptor-like factor 1 isoform X1

    UniProtKB/TrEMBL
    A0A287AFK4, A0A4X1U7V8
    Related
    ENSSSCP00000042619.3, ENSSSCT00000047258.3
    Conserved Domains (3) summary
    cd00063
    Location:235 → 337
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cl11960
    Location:44 → 130
    Ig; Immunoglobulin domain
    cl21522
    Location:132 → 227
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

  2. XM_021083476.1 → XP_020939135.1  cytokine receptor-like factor 1 isoform X2

    UniProtKB/TrEMBL
    A0A4X1U7V8, A0A8D1VEH8
    Conserved Domains (3) summary
    cd00063
    Location:235 → 337
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cl11960
    Location:44 → 130
    Ig; Immunoglobulin domain
    cl21522
    Location:132 → 227
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

  3. XM_021083477.1 → XP_020939136.1  cytokine receptor-like factor 1 isoform X3

    UniProtKB/TrEMBL
    A0A4X1U7V8
    Conserved Domains (3) summary
    cd00063
    Location:235 → 337
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cl11960
    Location:44 → 130
    Ig; Immunoglobulin domain
    cl21522
    Location:132 → 227
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
Nucleotide Protein
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