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Gde1 glycerophosphodiester phosphodiesterase 1 [ Cavia porcellus (domestic guinea pig) ]

Gene ID: 100734943, updated on 8-Mar-2024

Summary

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Gene symbol
Gde1
Gene description
glycerophosphodiester phosphodiesterase 1
See related
Ensembl:ENSCPOG00000040120
Gene type
protein coding
RefSeq status
MODEL
Organism
Cavia porcellus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Caviidae; Cavia
Orthologs
human mouse all
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Genomic context

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See Gde1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current mCavPor4.1 (GCF_034190915.1) Unplaced Scaffold NW_026947499.1 (45726768..45757566)
103 previous assembly Cavpor3.0 (GCF_000151735.1) Unplaced Scaffold NT_176415.1 (34500251..34531067)

NW_026947499.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106025366 Neighboring gene centriolar coiled-coil protein 110 Neighboring gene transmembrane channel like 5 Neighboring gene small nucleolar RNA SNORA40 Neighboring gene uncharacterized LOC134470730

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycerophosphodiester phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-acylethanolamine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ethanolamine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phospholipid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glycerophosphodiester phosphodiesterase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034190915.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCavPor4.1

Genomic

  1. NW_026947499.1 Reference mCavPor4.1

    Range
    45726768..45757566
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005007507.4 → XP_005007564.1  glycerophosphodiester phosphodiesterase 1 isoform X2

    Conserved Domains (2) summary
    cd08573
    Location:68 → 292
    GDPD_GDE1; Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE1 and similar proteins
    pfam03009
    Location:70 → 275
    GDPD; Glycerophosphoryl diester phosphodiesterase family

  2. XM_003477778.5 → XP_003477826.1  glycerophosphodiester phosphodiesterase 1 isoform X1

    UniProtKB/TrEMBL
    A0A286XA07
    Related
    ENSCPOP00000022248.1
    Conserved Domains (2) summary
    cd08573
    Location:68 → 323
    GDPD_GDE1; Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE1 and similar proteins
    pfam03009
    Location:70 → 306
    GDPD; Glycerophosphoryl diester phosphodiesterase family

  3. XM_023560989.2 → XP_023416757.1  glycerophosphodiester phosphodiesterase 1 isoform X3

    Conserved Domains (1) summary
    cd08573
    Location:1 → 213
    GDPD_GDE1; Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE1 and similar proteins
Nucleotide Protein
Heading Accession and Version

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