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Hdx highly divergent homeobox [ Cavia porcellus (domestic guinea pig) ]

Gene ID: 100721157, updated on 3-Apr-2024

Summary

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Gene symbol
Hdx
Gene description
highly divergent homeobox
See related
Ensembl:ENSCPOG00000014501
Gene type
protein coding
RefSeq status
MODEL
Organism
Cavia porcellus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Caviidae; Cavia
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_02 current mCavPor4.1 (GCF_034190915.1) Unplaced Scaffold NW_026947486.1 (49412320..49614633, complement)
103 previous assembly Cavpor3.0 (GCF_000151735.1) Unplaced Scaffold NT_176393.1 (14461400..14650667)

NW_026947486.1Genomic Context describing neighboring genes Neighboring gene POU class 3 homeobox 4 Neighboring gene cylicin 1 Neighboring gene ribosomal protein S6 kinase A6 Neighboring gene V-type proton ATPase subunit G 1-like Neighboring gene uncharacterized LOC134475470 Neighboring gene apolipoprotein O like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
highly divergent homeobox

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034190915.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCavPor4.1

Genomic

  1. NW_026947486.1 Reference mCavPor4.1

    Range
    49412320..49614633 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063246139.1 → XP_063102209.1  highly divergent homeobox

    UniProtKB/TrEMBL
    H0VR69

  2. XM_003470966.5 → XP_003471014.1  highly divergent homeobox

    See identical proteins and their annotated locations for XP_003471014.1

    UniProtKB/TrEMBL
    H0VR69
    Related
    ENSCPOP00000013067.2
    Conserved Domains (2) summary
    smart00389
    Location:4 → 59
    HOX; Homeodomain
    cd00086
    Location:442 → 498
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.

  3. XM_063246138.1 → XP_063102208.1  highly divergent homeobox

    UniProtKB/TrEMBL
    H0VR69

RNA

  1. XR_010046604.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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