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wdfy4 WDFY family member 4 [ Oreochromis niloticus (Nile tilapia) ]

Gene ID: 100712263, updated on 8-Mar-2024

Summary

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Gene symbol
wdfy4
Gene description
WDFY family member 4
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
Expression
Broad expression in ovary (RPKM 9.3), kidney (RPKM 2.3) and 8 other tissues See more
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG13
Exon count:
65
Annotation release Status Assembly LG Location
104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG13 NC_031978.2 (19075226..19115751)
103 previous assembly ASM185804v2 (GCF_001858045.1) LG13 NC_031978.1 (11157716..11198186)

Linkage Group LG13 - NC_031978.2Genomic Context describing neighboring genes Neighboring gene mitogen-activated protein kinase 8a Neighboring gene Rho GTPase activating protein 22a Neighboring gene putative ZDHHC-type palmitoyltransferase 6 Neighboring gene uncharacterized LOC102081932 Neighboring gene leucine rich repeat containing 18a Neighboring gene V-set and transmembrane domain containing 4a Neighboring gene linkage group 13 C10orf71 homolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Oreochromis niloticus Transcriptome or Gene expression Oreochromis niloticus Transcriptome or Gene expression
  • Description: Oreochromis niloticus (Nile Tilapia) RNA sequencing from multiple tissues.
  • BioProject: PRJNA78915
  • Analysis date: Fri Dec 29 00:23:36 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
WD repeat- and FYVE domain-containing protein 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference O_niloticus_UMD_NMBU Primary Assembly

Genomic

  1. NC_031978.2 Reference O_niloticus_UMD_NMBU Primary Assembly

    Range
    19075226..19115751
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025897691.1 → XP_025753476.1  WD repeat- and FYVE domain-containing protein 4

    Conserved Domains (5) summary
    sd00039
    Location:3033 → 3068
    7WD40; WD40 repeat [structural motif]
    pfam02138
    Location:2607 → 2886
    Beach; Beige/BEACH domain
    pfam15787
    Location:1431 → 1584
    DUF4704; Domain of unknown function (DUF4704)
    cl17171
    Location:2465 → 2575
    PH-like; Pleckstrin homology-like domain
    cl25539
    Location:2986 → 3146
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  2. XM_013269045.3 → XP_013124499.1  WD repeat- and FYVE domain-containing protein 4

    Conserved Domains (5) summary
    sd00039
    Location:3033 → 3068
    7WD40; WD40 repeat [structural motif]
    pfam02138
    Location:2607 → 2886
    Beach; Beige/BEACH domain
    pfam15787
    Location:1431 → 1584
    DUF4704; Domain of unknown function (DUF4704)
    cl17171
    Location:2465 → 2575
    PH-like; Pleckstrin homology-like domain
    cl25539
    Location:2986 → 3146
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Nucleotide Protein
Heading Accession and Version

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