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wdr18 WD repeat domain 18 [ Oreochromis niloticus (Nile tilapia) ]

Gene ID: 100711947, updated on 8-Mar-2024

Summary

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Gene symbol
wdr18
Gene description
WD repeat domain 18
See related
Ensembl:ENSONIG00000004557
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
Expression
Broad expression in ovary (RPKM 40.1), testis (RPKM 21.5) and 9 other tissues See more
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG23
Exon count:
10
Annotation release Status Assembly LG Location
104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG23 NC_031986.2 (36140547..36165830, complement)
103 previous assembly ASM185804v2 (GCF_001858045.1) LG23 NC_031986.1 (9519509..9544771)

Linkage Group LG23 - NC_031986.2Genomic Context describing neighboring genes Neighboring gene transmembrane protein 259 Neighboring gene uncharacterized LOC102078488 Neighboring gene glutamate receptor, ionotropic, N-methyl-D-aspartate 3Bb Neighboring gene uncharacterized protein KIAA1614 Neighboring gene syntaxin 6 Neighboring gene ELAV-like protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Oreochromis niloticus Transcriptome or Gene expression Oreochromis niloticus Transcriptome or Gene expression
  • Description: Oreochromis niloticus (Nile Tilapia) RNA sequencing from multiple tissues.
  • BioProject: PRJNA78915
  • Analysis date: Fri Dec 29 00:23:36 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated DNA replication IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in rRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of nuclear pre-replicative complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
WD repeat-containing protein 18

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference O_niloticus_UMD_NMBU Primary Assembly

Genomic

  1. NC_031986.2 Reference O_niloticus_UMD_NMBU Primary Assembly

    Range
    36140547..36165830 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003451323.5 → XP_003451371.2  WD repeat-containing protein 18

    UniProtKB/TrEMBL
    A0A669D3C3, I3JA47
    Related
    ENSONIP00000005737.2, ENSONIT00000005741.2
    Conserved Domains (4) summary
    COG2319
    Location:11 → 351
    WD40; WD40 repeat [General function prediction only]
    pfam14077
    Location:383 → 430
    WD40_alt; Alternative WD40 repeat motif
    sd00039
    Location:85 → 120
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:35 → 315
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Nucleotide Protein
Heading Accession and Version

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