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scube3 signal peptide, CUB domain, EGF-like 3 [ Oreochromis niloticus (Nile tilapia) ]

Gene ID: 100703500, updated on 8-Mar-2024

Summary

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Gene symbol
scube3
Gene description
signal peptide, CUB domain, EGF-like 3
See related
Ensembl:ENSONIG00000016993
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
Expression
Biased expression in skin (RPKM 33.0), eye (RPKM 10.0) and 4 other tissues See more
Orthologs
zebrafish all
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Genomic context

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See scube3 in Genome Data Viewer
Location:
chromosome: LG20
Exon count:
23
Annotation release Status Assembly LG Location
104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG20 NC_031984.2 (12288746..12364652)
103 previous assembly ASM185804v2 (GCF_001858045.1) LG20 NC_031984.1 (12790648..12866559)

Linkage Group LG20 - NC_031984.2Genomic Context describing neighboring genes Neighboring gene ankyrin repeat and sterile alpha motif domain containing 1A Neighboring gene specifically androgen-regulated gene protein Neighboring gene complement receptor type 1 Neighboring gene 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 2 Neighboring gene uncharacterized LOC112843271

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Oreochromis niloticus Transcriptome or Gene expression Oreochromis niloticus Transcriptome or Gene expression
  • Description: Oreochromis niloticus (Nile Tilapia) RNA sequencing from multiple tissues.
  • BioProject: PRJNA78915
  • Analysis date: Fri Dec 29 00:23:36 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
signal peptide, CUB and EGF-like domain-containing protein 3
Names
signal peptide, CUB domain and EGF like domain containing 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference O_niloticus_UMD_NMBU Primary Assembly

Genomic

  1. NC_031984.2 Reference O_niloticus_UMD_NMBU Primary Assembly

    Range
    12288746..12364652
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005448605.4 → XP_005448662.1  signal peptide, CUB and EGF-like domain-containing protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A669EBC0, I3KJY2
    Related
    ENSONIP00000021427.2, ENSONIT00000021446.2
    Conserved Domains (5) summary
    cd00041
    Location:826 → 937
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    pfam07699
    Location:774 → 821
    GCC2_GCC3; GCC2 and GCC3
    pfam12947
    Location:38 → 73
    EGF_3; EGF domain
    pfam14670
    Location:269 → 304
    FXa_inhibition; Coagulation Factor Xa inhibitory site
    cl00057
    Location:342 → 378
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

  2. XM_005448606.4 → XP_005448663.1  signal peptide, CUB and EGF-like domain-containing protein 3 isoform X2

    UniProtKB/TrEMBL
    A0A669F389
    Related
    ENSONIP00000079960.1, ENSONIT00000068533.1
    Conserved Domains (5) summary
    cd00041
    Location:810 → 921
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    pfam07699
    Location:758 → 805
    GCC2_GCC3; GCC2 and GCC3
    pfam12947
    Location:38 → 73
    EGF_3; EGF domain
    pfam14670
    Location:253 → 288
    FXa_inhibition; Coagulation Factor Xa inhibitory site
    cl00057
    Location:326 → 362
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
Nucleotide Protein
Heading Accession and Version

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