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sgpp1b sphingosine-1-phosphate phosphatase 1b [ Oreochromis niloticus (Nile tilapia) ]

Gene ID: 100700490, updated on 8-Mar-2024

Summary

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Gene symbol
sgpp1b
Gene description
sphingosine-1-phosphate phosphatase 1b
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
Also known as
sgpp1
Expression
Restricted expression toward testis (RPKM 30.2) See more
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG19
Exon count:
3
Annotation release Status Assembly LG Location
104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG19 NC_031983.2 (5241818..5267501)
103 previous assembly ASM185804v2 (GCF_001858045.1) LG19 NC_031983.1 (26114502..26136901, complement)

Linkage Group LG19 - NC_031983.2Genomic Context describing neighboring genes Neighboring gene small nuclear RNA activating complex, polypeptide 1b Neighboring gene synaptotagmin XVI Neighboring gene uncharacterized LOC112843060 Neighboring gene WD repeat domain 89

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Oreochromis niloticus Transcriptome or Gene expression Oreochromis niloticus Transcriptome or Gene expression
  • Description: Oreochromis niloticus (Nile Tilapia) RNA sequencing from multiple tissues.
  • BioProject: PRJNA78915
  • Analysis date: Fri Dec 29 00:23:36 2017

Bibliography

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Related articles in PubMed

  1. Transcriptome profiling and digital gene expression analysis of Nile tilapia (Oreochromis niloticus) infected by Streptococcus agalactiae. Zhang R, et al. Mol Biol Rep, 2013 Oct. PMID 24068429

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sphingosine-1-phosphate phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in phospholipid dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingosine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sphingosine-1-phosphate phosphatase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference O_niloticus_UMD_NMBU Primary Assembly

Genomic

  1. NC_031983.2 Reference O_niloticus_UMD_NMBU Primary Assembly

    Range
    5241818..5267501
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003451196.5 → XP_003451244.3  sphingosine-1-phosphate phosphatase 1

Nucleotide Protein
Heading Accession and Version

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