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tipin timeless interacting protein [ Oreochromis niloticus (Nile tilapia) ]

Gene ID: 100698080, updated on 8-Mar-2024

Summary

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Gene symbol
tipin
Gene description
timeless interacting protein
See related
Ensembl:ENSONIG00000029040
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
Expression
Broad expression in testis (RPKM 18.8), skin (RPKM 9.3) and 8 other tissues See more
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG1
Exon count:
9
Annotation release Status Assembly LG Location
104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG1 NC_031965.2 (3344383..3360981, complement)
103 previous assembly ASM185804v2 (GCF_001858045.1) LG1 NC_031965.1 (6237094..6252981)

Linkage Group LG1 - NC_031965.2Genomic Context describing neighboring genes Neighboring gene src substrate cortactin Neighboring gene uncharacterized LOC112847681 Neighboring gene DIS3 like exosome 3'-5' exoribonuclease Neighboring gene lactase-like a Neighboring gene crystallin beta gamma X

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Oreochromis niloticus Transcriptome or Gene expression Oreochromis niloticus Transcriptome or Gene expression
  • Description: Oreochromis niloticus (Nile Tilapia) RNA sequencing from multiple tissues.
  • BioProject: PRJNA78915
  • Analysis date: Fri Dec 29 00:23:36 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA damage response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in DNA replication checkpoint signaling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in replication fork arrest IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in replication fork processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of replication fork protection complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
TIMELESS-interacting protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference O_niloticus_UMD_NMBU Primary Assembly

Genomic

  1. NC_031965.2 Reference O_niloticus_UMD_NMBU Primary Assembly

    Range
    3344383..3360981 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005457414.4 → XP_005457471.1  TIMELESS-interacting protein isoform X3

    UniProtKB/TrEMBL
    A0A669CFM4
    Related
    ENSONIP00000045362.1, ENSONIT00000091804.1
    Conserved Domains (1) summary
    pfam07962
    Location:73 → 151
    Swi3; Replication Fork Protection Component Swi3

  2. XM_005457413.4 → XP_005457470.1  TIMELESS-interacting protein isoform X2

    UniProtKB/TrEMBL
    A0A669EQX5
    Related
    ENSONIP00000075319.1, ENSONIT00000072088.1
    Conserved Domains (1) summary
    pfam07962
    Location:119 → 193
    Swi3; Replication Fork Protection Component Swi3

  3. XM_005457412.4 → XP_005457469.1  TIMELESS-interacting protein isoform X1

    UniProtKB/TrEMBL
    A0A669EQX5
    Conserved Domains (1) summary
    pfam07962
    Location:121 → 195
    Swi3; Replication Fork Protection Component Swi3
Nucleotide Protein
Heading Accession and Version

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