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f3a coagulation factor IIIa [ Oreochromis niloticus (Nile tilapia) ]

Gene ID: 100694378, updated on 8-Mar-2024

Summary

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Gene symbol
f3a
Gene description
coagulation factor IIIa
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
Also known as
f3
Expression
Biased expression in skin (RPKM 26.3), brain (RPKM 9.2) and 5 other tissues See more
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG9
Exon count:
6
Annotation release Status Assembly LG Location
104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG9 NC_031974.2 (34951536..34959009)
103 previous assembly ASM185804v2 (GCF_001858045.1) Unplaced Scaffold NW_017615706.1 (641190..646297)

Linkage Group LG9 - NC_031974.2Genomic Context describing neighboring genes Neighboring gene calponin 3, acidic a Neighboring gene uncharacterized LOC102080569 Neighboring gene acid phosphatase 5b, tartrate resistant Neighboring gene ATP-binding cassette, sub-family D (ALD), member 3a Neighboring gene neurogenic differentiation factor 6-A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Oreochromis niloticus Transcriptome or Gene expression Oreochromis niloticus Transcriptome or Gene expression
  • Description: Oreochromis niloticus (Nile Tilapia) RNA sequencing from multiple tissues.
  • BioProject: PRJNA78915
  • Analysis date: Fri Dec 29 00:23:36 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in blood coagulation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tissue factor
Names
coagulation factor III, tissue factor

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference O_niloticus_UMD_NMBU Primary Assembly

Genomic

  1. NC_031974.2 Reference O_niloticus_UMD_NMBU Primary Assembly

    Range
    34951536..34959009
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003457512.5 → XP_003457560.1  tissue factor

    Conserved Domains (1) summary
    cl21522
    Location:28 → 106
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
Nucleotide Protein
Heading Accession and Version

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