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ror1 receptor tyrosine kinase-like orphan receptor 1 [ Oreochromis niloticus (Nile tilapia) ]

Gene ID: 100691473, updated on 11-Apr-2024

Summary

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Gene symbol
ror1
Gene description
receptor tyrosine kinase-like orphan receptor 1
See related
Ensembl:ENSONIG00000008814
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
Expression
Broad expression in testis (RPKM 2.7), whole embryo (RPKM 1.8) and 6 other tissues See more
Orthologs
human zebrafish all
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Genomic context

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See ror1 in Genome Data Viewer
Location:
chromosome: LG17
Exon count:
14
Annotation release Status Assembly LG Location
104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG17 NC_031981.2 (33701978..33836409)
103 previous assembly ASM185804v2 (GCF_001858045.1) LG17 NC_031981.1 (35693709..35828166)

Linkage Group LG17 - NC_031981.2Genomic Context describing neighboring genes Neighboring gene EF-hand calcium binding domain 7 Neighboring gene phosphoglucomutase 1 Neighboring gene uncharacterized LOC102078345 Neighboring gene cache domain containing 1 Neighboring gene ribonucleoprotein, PTB-binding 2 Neighboring gene Janus kinase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Oreochromis niloticus Transcriptome or Gene expression Oreochromis niloticus Transcriptome or Gene expression
  • Description: Oreochromis niloticus (Nile Tilapia) RNA sequencing from multiple tissues.
  • BioProject: PRJNA78915
  • Analysis date: Fri Dec 29 00:23:36 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell surface receptor protein tyrosine kinase signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in multicellular organism development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of canonical NF-kappaB signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of receptor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
inactive tyrosine-protein kinase transmembrane receptor ROR1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference O_niloticus_UMD_NMBU Primary Assembly

Genomic

  1. NC_031981.2 Reference O_niloticus_UMD_NMBU Primary Assembly

    Range
    33701978..33836409
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005457086.4 → XP_005457143.2  inactive tyrosine-protein kinase transmembrane receptor ROR1 isoform X1

    UniProtKB/TrEMBL
    A0A669EMA2, I3JQD8
    Related
    ENSONIP00000011082.2, ENSONIT00000011091.2

  2. XM_025899817.1 → XP_025755602.1  inactive tyrosine-protein kinase transmembrane receptor ROR1 isoform X2

    UniProtKB/TrEMBL
    A0A669EMA2
    Conserved Domains (3) summary
    smart00130
    Location:118 → 199
    KR; Kringle domain
    cd05090
    Location:271 → 553
    PTKc_Ror1; Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1
    cl02447
    Location:1 → 114
    CRD_FZ; CRD_domain cysteine-rich domain, also known as Fz (frizzled) domain

  3. XM_025899818.1 → XP_025755603.1  inactive tyrosine-protein kinase transmembrane receptor ROR1 isoform X2

    UniProtKB/TrEMBL
    A0A669EMA2
    Related
    ENSONIP00000074041.1, ENSONIT00000034359.1
    Conserved Domains (3) summary
    smart00130
    Location:118 → 199
    KR; Kringle domain
    cd05090
    Location:271 → 553
    PTKc_Ror1; Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1
    cl02447
    Location:1 → 114
    CRD_FZ; CRD_domain cysteine-rich domain, also known as Fz (frizzled) domain
Nucleotide Protein
Heading Accession and Version

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