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iars1 isoleucyl-tRNA synthetase 1 [ Oreochromis niloticus (Nile tilapia) ]

Gene ID: 100691135, updated on 8-Mar-2024

Summary

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Gene symbol
iars1
Gene description
isoleucyl-tRNA synthetase 1
See related
Ensembl:ENSONIG00000014366
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
Also known as
iars
Expression
Ubiquitous expression in skin (RPKM 25.5), testis (RPKM 18.8) and 9 other tissues See more
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG5
Exon count:
34
Annotation release Status Assembly LG Location
104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG5 NC_031970.2 (19449780..19506144, complement)
103 previous assembly ASM185804v2 (GCF_001858045.1) LG5 NC_031970.1 (30538840..30595201, complement)

Linkage Group LG5 - NC_031970.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC109202267 Neighboring gene solute carrier family 6 member 11b Neighboring gene ATPase plasma membrane Ca2+ transporting 2 Neighboring gene vimentin pseudogene Neighboring gene ribosomal protein L29 Neighboring gene dual specificity phosphatase 7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Oreochromis niloticus Transcriptome or Gene expression Oreochromis niloticus Transcriptome or Gene expression
  • Description: Oreochromis niloticus (Nile Tilapia) RNA sequencing from multiple tissues.
  • BioProject: PRJNA78915
  • Analysis date: Fri Dec 29 00:23:36 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables aminoacyl-tRNA editing activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables isoleucine-tRNA ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in isoleucyl-tRNA aminoacylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
isoleucine--tRNA ligase, cytoplasmic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference O_niloticus_UMD_NMBU Primary Assembly

Genomic

  1. NC_031970.2 Reference O_niloticus_UMD_NMBU Primary Assembly

    Range
    19449780..19506144 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003454548.5 → XP_003454596.1  isoleucine--tRNA ligase, cytoplasmic

    UniProtKB/TrEMBL
    I3KAB8
    Related
    ENSONIP00000060429.1, ENSONIT00000036557.1
    Conserved Domains (3) summary
    cd07961
    Location:640 → 833
    Anticodon_Ia_Ile_ABEc; Anticodon-binding domain of archaeal, bacterial, and eukaryotic cytoplasmic isoleucyl tRNA synthetases
    cd00818
    Location:39 → 640
    IleRS_core; catalytic core domain of isoleucyl-tRNA synthetases
    PLN02882
    Location:11 → 1069
    PLN02882; aminoacyl-tRNA ligase
Nucleotide Protein
Heading Accession and Version

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