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ZMAT5 zinc finger matrin-type 5 [ Loxodonta africana (African savanna elephant) ]

Gene ID: 100660138, updated on 11-Apr-2024

Summary

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Gene symbol
ZMAT5
Gene description
zinc finger matrin-type 5
See related
EnsemblRapid:ENSLAFG00000010823
Gene type
protein coding
RefSeq status
MODEL
Organism
Loxodonta africana
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Proboscidea; Elephantidae; Loxodonta
Orthologs
human mouse all
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Genomic context

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See ZMAT5 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_04 current mLoxAfr1.hap2 (GCF_030014295.1) 19 NC_087360.1 (26654101..26682924)
102 previous assembly Loxafr3.0 (GCF_000001905.1) Unplaced Scaffold NW_003573488.1 (4933866..4962655)

Chromosome 19 - NC_087360.1Genomic Context describing neighboring genes Neighboring gene activating signal cointegrator 1 complex subunit 2 Neighboring gene cytochrome b-c1 complex subunit 9 Neighboring gene calcium binding protein 7 Neighboring gene NF2, moesin-ezrin-radixin like (MERLIN) tumor suppressor Neighboring gene nipsnap homolog 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U12-type spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger matrin-type protein 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030014295.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mLoxAfr1.hap2

Genomic

  1. NC_087360.1 Reference mLoxAfr1.hap2

    Range
    26654101..26682924
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010598751.3 → XP_010597053.1  zinc finger matrin-type protein 5 isoform X1

    See identical proteins and their annotated locations for XP_010597053.1

    UniProtKB/TrEMBL
    G3T6C0
    Conserved Domains (2) summary
    pfam00642
    Location:55 → 76
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
    cl22907
    Location:4 → 45
    zf-U1; U1 zinc finger

  2. XM_064272493.1 → XP_064128563.1  zinc finger matrin-type protein 5 isoform X2

  3. XM_023559252.2 → XP_023415020.1  zinc finger matrin-type protein 5 isoform X1

    UniProtKB/TrEMBL
    G3T6C0
    Related
    ENSLAFP00000009056.3, ENSLAFT00000010822.4
    Conserved Domains (2) summary
    pfam00642
    Location:55 → 76
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
    cl22907
    Location:4 → 45
    zf-U1; U1 zinc finger

  4. XM_023559253.2 → XP_023415021.1  zinc finger matrin-type protein 5 isoform X1

    UniProtKB/TrEMBL
    G3T6C0
    Conserved Domains (2) summary
    pfam00642
    Location:55 → 76
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
    cl22907
    Location:4 → 45
    zf-U1; U1 zinc finger

  5. XM_064272494.1 → XP_064128564.1  zinc finger matrin-type protein 5 isoform X3

Nucleotide Protein
Heading Accession and Version

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