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TCF3 transcription factor 3 [ Loxodonta africana (African savanna elephant) ]

Gene ID: 100654844, updated on 6-Jun-2024

Summary

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Gene symbol
TCF3
Gene description
transcription factor 3
See related
EnsemblRapid:ENSLAFG00000026277
Gene type
protein coding
RefSeq status
MODEL
Organism
Loxodonta africana
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Proboscidea; Elephantidae; Loxodonta
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 3
Exon count:
21
Annotation release Status Assembly Chr Location
RS_2024_04 current mLoxAfr1.hap2 (GCF_030014295.1) 3 NC_087344.1 (1342551..1384646, complement)
102 previous assembly Loxafr3.0 (GCF_000001905.1) Unplaced Scaffold NW_003573573.1 (1337014..1377956, complement)

Chromosome 3 - NC_087344.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC135230582 Neighboring gene cytochrome b-c1 complex subunit 10 Neighboring gene methyl-CpG binding domain protein 3 Neighboring gene one cut homeobox 3 Neighboring gene ATPase phospholipid transporting 8B3 Neighboring gene guanine nucleotide exchange factor subunit RIC1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in immunoglobulin V(D)J recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor E2-alpha

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030014295.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mLoxAfr1.hap2

Genomic

  1. NC_087344.1 Reference mLoxAfr1.hap2

    Range
    1342551..1384646 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_064280117.1 → XP_064136187.1  transcription factor E2-alpha isoform X6

    UniProtKB/TrEMBL
    G3UGS9

  2. XM_064280115.1 → XP_064136185.1  transcription factor E2-alpha isoform X4

  3. XM_064280114.1 → XP_064136184.1  transcription factor E2-alpha isoform X3

    UniProtKB/TrEMBL
    G3UGS9

  4. XM_064280113.1 → XP_064136183.1  transcription factor E2-alpha isoform X2

    UniProtKB/TrEMBL
    G3UGS9
    Related
    ENSLAFP00000027037.2, ENSLAFT00000035131.2

  5. XM_064280112.1 → XP_064136182.1  transcription factor E2-alpha isoform X1

    Related
    ENSLAFP00000032469.1, ENSLAFT00000057149.1

  6. XM_064280119.1 → XP_064136189.1  transcription factor E2-alpha isoform X8

  7. XM_064280116.1 → XP_064136186.1  transcription factor E2-alpha isoform X5

  8. XM_064280118.1 → XP_064136188.1  transcription factor E2-alpha isoform X7

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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