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STX10 syntaxin 10 [ Sus scrofa (pig) ]

Gene ID: 100627609, updated on 17-Aug-2024

Summary

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Official Symbol
STX10provided by VGNC
Official Full Name
syntaxin 10provided by VGNC
Primary source
VGNC:VGNC:93584
See related
Ensembl:ENSSSCG00000013752
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in spleen (RPKM 25.7), lung (RPKM 22.1) and 8 other tissues See more
Orthologs
human all
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Genomic context

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See STX10 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
8
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 2 NC_010444.4 (65914132..65917075)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 2 NC_010444.3 (66214676..66217583)

Chromosome 2 - NC_010444.4Genomic Context describing neighboring genes Neighboring gene calcium voltage-gated channel subunit alpha1 A Neighboring gene immediate early response 2 Neighboring gene nucleus accumbens associated 1 Neighboring gene tRNA methyltransferase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables SNAP receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Golgi vesicle transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
syntaxin-10

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010444.4 Reference Sscrofa11.1 Primary Assembly

    Range
    65914132..65917075
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003480777.4 → XP_003480825.1  syntaxin-10 isoform X1

    UniProtKB/TrEMBL
    A0A4X1T0P5, A0A5G2R0V4, F1SD82
    Related
    ENSSSCP00000070743.2, ENSSSCT00000067973.2
    Conserved Domains (2) summary
    cd15851
    Location:160 → 225
    SNARE_Syntaxin6; SNARE motif of syntaxin 6
    pfam09177
    Location:13 → 103
    Syntaxin-6_N; Syntaxin 6, N-terminal

  2. XM_005652871.3 → XP_005652928.1  syntaxin-10 isoform X2

    Related
    ENSSSCP00000014621.5, ENSSSCT00000015026.5
    Conserved Domains (2) summary
    pfam09177
    Location:13 → 103
    Syntaxin-6_N; Syntaxin 6, N-terminal
    cl22856
    Location:160 → 192
    SNARE; SNARE motif
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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